Coronavirus phylogeny based on triplets of nucleic acids bases

We considered the fully overlapping triplets of nucleotide bases and proposed a 2D graphical representation of protein sequences consisting of 20 amino acids and a stop code. Based on this 2D graphical representation, we outlined a new approach to analyze the phylogenetic relationships of coronaviru...

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Detalles Bibliográficos
Autores principales: Liao, Bo, Liu, Yanshu, Li, Renfa, Zhu, Wen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2006
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094651/
https://www.ncbi.nlm.nih.gov/pubmed/32226086
http://dx.doi.org/10.1016/j.cplett.2006.01.030
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author Liao, Bo
Liu, Yanshu
Li, Renfa
Zhu, Wen
author_facet Liao, Bo
Liu, Yanshu
Li, Renfa
Zhu, Wen
author_sort Liao, Bo
collection PubMed
description We considered the fully overlapping triplets of nucleotide bases and proposed a 2D graphical representation of protein sequences consisting of 20 amino acids and a stop code. Based on this 2D graphical representation, we outlined a new approach to analyze the phylogenetic relationships of coronaviruses by constructing a covariance matrix. The evolutionary distances are obtained through measuring the differences among the two-dimensional curves.
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spelling pubmed-70946512020-03-25 Coronavirus phylogeny based on triplets of nucleic acids bases Liao, Bo Liu, Yanshu Li, Renfa Zhu, Wen Chem Phys Lett Article We considered the fully overlapping triplets of nucleotide bases and proposed a 2D graphical representation of protein sequences consisting of 20 amino acids and a stop code. Based on this 2D graphical representation, we outlined a new approach to analyze the phylogenetic relationships of coronaviruses by constructing a covariance matrix. The evolutionary distances are obtained through measuring the differences among the two-dimensional curves. Elsevier B.V. 2006-04-15 2006-02-20 /pmc/articles/PMC7094651/ /pubmed/32226086 http://dx.doi.org/10.1016/j.cplett.2006.01.030 Text en Copyright © 2006 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Liao, Bo
Liu, Yanshu
Li, Renfa
Zhu, Wen
Coronavirus phylogeny based on triplets of nucleic acids bases
title Coronavirus phylogeny based on triplets of nucleic acids bases
title_full Coronavirus phylogeny based on triplets of nucleic acids bases
title_fullStr Coronavirus phylogeny based on triplets of nucleic acids bases
title_full_unstemmed Coronavirus phylogeny based on triplets of nucleic acids bases
title_short Coronavirus phylogeny based on triplets of nucleic acids bases
title_sort coronavirus phylogeny based on triplets of nucleic acids bases
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094651/
https://www.ncbi.nlm.nih.gov/pubmed/32226086
http://dx.doi.org/10.1016/j.cplett.2006.01.030
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