Cargando…

Rigidity enhances a magic-number effect in polymer phase separation

Cells possess non-membrane-bound bodies, many of which are now understood as phase-separated condensates. One class of such condensates is composed of two polymer species, where each consists of repeated binding sites that interact in a one-to-one fashion with the binding sites of the other polymer....

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Bin, He, Guanhua, Weiner, Benjamin G., Ronceray, Pierre, Meir, Yigal, Jonikas, Martin C., Wingreen, Ned S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7096466/
https://www.ncbi.nlm.nih.gov/pubmed/32214099
http://dx.doi.org/10.1038/s41467-020-15395-6
_version_ 1783510810166820864
author Xu, Bin
He, Guanhua
Weiner, Benjamin G.
Ronceray, Pierre
Meir, Yigal
Jonikas, Martin C.
Wingreen, Ned S.
author_facet Xu, Bin
He, Guanhua
Weiner, Benjamin G.
Ronceray, Pierre
Meir, Yigal
Jonikas, Martin C.
Wingreen, Ned S.
author_sort Xu, Bin
collection PubMed
description Cells possess non-membrane-bound bodies, many of which are now understood as phase-separated condensates. One class of such condensates is composed of two polymer species, where each consists of repeated binding sites that interact in a one-to-one fashion with the binding sites of the other polymer. Biologically-motivated modeling revealed that phase separation is suppressed by a “magic-number effect” which occurs if the two polymers can form fully-bonded small oligomers by virtue of the number of binding sites in one polymer being an integer multiple of the number of binding sites of the other. Here we use lattice-model simulations and analytical calculations to show that this magic-number effect can be greatly enhanced if one of the polymer species has a rigid shape that allows for multiple distinct bonding conformations. Moreover, if one species is rigid, the effect is robust over a much greater range of relative concentrations of the two species.
format Online
Article
Text
id pubmed-7096466
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-70964662020-03-27 Rigidity enhances a magic-number effect in polymer phase separation Xu, Bin He, Guanhua Weiner, Benjamin G. Ronceray, Pierre Meir, Yigal Jonikas, Martin C. Wingreen, Ned S. Nat Commun Article Cells possess non-membrane-bound bodies, many of which are now understood as phase-separated condensates. One class of such condensates is composed of two polymer species, where each consists of repeated binding sites that interact in a one-to-one fashion with the binding sites of the other polymer. Biologically-motivated modeling revealed that phase separation is suppressed by a “magic-number effect” which occurs if the two polymers can form fully-bonded small oligomers by virtue of the number of binding sites in one polymer being an integer multiple of the number of binding sites of the other. Here we use lattice-model simulations and analytical calculations to show that this magic-number effect can be greatly enhanced if one of the polymer species has a rigid shape that allows for multiple distinct bonding conformations. Moreover, if one species is rigid, the effect is robust over a much greater range of relative concentrations of the two species. Nature Publishing Group UK 2020-03-25 /pmc/articles/PMC7096466/ /pubmed/32214099 http://dx.doi.org/10.1038/s41467-020-15395-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Xu, Bin
He, Guanhua
Weiner, Benjamin G.
Ronceray, Pierre
Meir, Yigal
Jonikas, Martin C.
Wingreen, Ned S.
Rigidity enhances a magic-number effect in polymer phase separation
title Rigidity enhances a magic-number effect in polymer phase separation
title_full Rigidity enhances a magic-number effect in polymer phase separation
title_fullStr Rigidity enhances a magic-number effect in polymer phase separation
title_full_unstemmed Rigidity enhances a magic-number effect in polymer phase separation
title_short Rigidity enhances a magic-number effect in polymer phase separation
title_sort rigidity enhances a magic-number effect in polymer phase separation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7096466/
https://www.ncbi.nlm.nih.gov/pubmed/32214099
http://dx.doi.org/10.1038/s41467-020-15395-6
work_keys_str_mv AT xubin rigidityenhancesamagicnumbereffectinpolymerphaseseparation
AT heguanhua rigidityenhancesamagicnumbereffectinpolymerphaseseparation
AT weinerbenjaming rigidityenhancesamagicnumbereffectinpolymerphaseseparation
AT ronceraypierre rigidityenhancesamagicnumbereffectinpolymerphaseseparation
AT meiryigal rigidityenhancesamagicnumbereffectinpolymerphaseseparation
AT jonikasmartinc rigidityenhancesamagicnumbereffectinpolymerphaseseparation
AT wingreenneds rigidityenhancesamagicnumbereffectinpolymerphaseseparation