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The transcriptome of the newt Cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians
Amphibians evolved in the Devonian period about 400 Mya and represent a transition step in tetrapod evolution. Among amphibians, high-throughput sequencing data are very limited for Caudata, due to their largest genome sizes among terrestrial vertebrates. In this paper we present the transcriptome f...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7096497/ https://www.ncbi.nlm.nih.gov/pubmed/32214214 http://dx.doi.org/10.1038/s41598-020-62408-x |
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author | Biscotti, Maria Assunta Carducci, Federica Barucca, Marco Gerdol, Marco Pallavicini, Alberto Schartl, Manfred Canapa, Adriana Adolfi, Mateus Contar |
author_facet | Biscotti, Maria Assunta Carducci, Federica Barucca, Marco Gerdol, Marco Pallavicini, Alberto Schartl, Manfred Canapa, Adriana Adolfi, Mateus Contar |
author_sort | Biscotti, Maria Assunta |
collection | PubMed |
description | Amphibians evolved in the Devonian period about 400 Mya and represent a transition step in tetrapod evolution. Among amphibians, high-throughput sequencing data are very limited for Caudata, due to their largest genome sizes among terrestrial vertebrates. In this paper we present the transcriptome from the fire bellied newt Cynops orientalis. Data here presented display a high level of completeness, comparable to the fully sequenced genomes available from other amphibians. Moreover, this work focused on genes involved in gametogenesis and sexual development. Surprisingly, the gsdf gene was identified for the first time in a tetrapod species, so far known only from bony fish and basal sarcopterygians. Our analysis failed to isolate fgf24 and foxl3, supporting the possible loss of both genes in the common ancestor of Rhipidistians. In Cynops, the expression analysis of genes described to be sex-related in vertebrates singled out an expected functional role for some genes, while others displayed an unforeseen behavior, confirming the high variability of the sex-related pathway in vertebrates. |
format | Online Article Text |
id | pubmed-7096497 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70964972020-03-30 The transcriptome of the newt Cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians Biscotti, Maria Assunta Carducci, Federica Barucca, Marco Gerdol, Marco Pallavicini, Alberto Schartl, Manfred Canapa, Adriana Adolfi, Mateus Contar Sci Rep Article Amphibians evolved in the Devonian period about 400 Mya and represent a transition step in tetrapod evolution. Among amphibians, high-throughput sequencing data are very limited for Caudata, due to their largest genome sizes among terrestrial vertebrates. In this paper we present the transcriptome from the fire bellied newt Cynops orientalis. Data here presented display a high level of completeness, comparable to the fully sequenced genomes available from other amphibians. Moreover, this work focused on genes involved in gametogenesis and sexual development. Surprisingly, the gsdf gene was identified for the first time in a tetrapod species, so far known only from bony fish and basal sarcopterygians. Our analysis failed to isolate fgf24 and foxl3, supporting the possible loss of both genes in the common ancestor of Rhipidistians. In Cynops, the expression analysis of genes described to be sex-related in vertebrates singled out an expected functional role for some genes, while others displayed an unforeseen behavior, confirming the high variability of the sex-related pathway in vertebrates. Nature Publishing Group UK 2020-03-25 /pmc/articles/PMC7096497/ /pubmed/32214214 http://dx.doi.org/10.1038/s41598-020-62408-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Biscotti, Maria Assunta Carducci, Federica Barucca, Marco Gerdol, Marco Pallavicini, Alberto Schartl, Manfred Canapa, Adriana Adolfi, Mateus Contar The transcriptome of the newt Cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians |
title | The transcriptome of the newt Cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians |
title_full | The transcriptome of the newt Cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians |
title_fullStr | The transcriptome of the newt Cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians |
title_full_unstemmed | The transcriptome of the newt Cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians |
title_short | The transcriptome of the newt Cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians |
title_sort | transcriptome of the newt cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7096497/ https://www.ncbi.nlm.nih.gov/pubmed/32214214 http://dx.doi.org/10.1038/s41598-020-62408-x |
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