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Direct buffer composition of blood pre-process for nucleic acid based diagnostics
Recently, a variety of methods, so called “direct buffer”, have been developed to utilize nucleic acid in the blood for the measurement of infectious bacteria and virus without any equipment in the field. In here, we first investigated the individual and combinatory effects of candidate chemicals wh...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Korean BioChip Society (KBCS)
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7097592/ https://www.ncbi.nlm.nih.gov/pubmed/32226588 http://dx.doi.org/10.1007/s13206-017-1401-y |
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author | Kim, YeJi Lee, Won-Nyoung Yoo, Hyun Jin Baek, Changyoon Min, Junhong |
author_facet | Kim, YeJi Lee, Won-Nyoung Yoo, Hyun Jin Baek, Changyoon Min, Junhong |
author_sort | Kim, YeJi |
collection | PubMed |
description | Recently, a variety of methods, so called “direct buffer”, have been developed to utilize nucleic acid in the blood for the measurement of infectious bacteria and virus without any equipment in the field. In here, we first investigated the individual and combinatory effects of candidate chemicals which might be composed of the direct buffer on the PCR inhibition reduction of main compositions in whole blood. The long and short PEGs, Na(2)SO(4) and GuSCN were selected as representative kosmotropic and chaotropic salts, respectively. MgCl(2) were chosen as divalent cation source and NaOH was used to control blood pH. The effect of common non-ionic biological detergent was tested with Triton X-100 and SDS (Sodium Dodecyl sulfate) was chosen as anionic detergent. These results could provide a foundation for the development of sample preparation solution in nucleic acid based diagnostic field. As a result, the direct buffer developed in this study was able to detect viruses with a concentration of 10(2) pfu/100 μL of whole blood by a very simple method. |
format | Online Article Text |
id | pubmed-7097592 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | The Korean BioChip Society (KBCS) |
record_format | MEDLINE/PubMed |
spelling | pubmed-70975922020-03-26 Direct buffer composition of blood pre-process for nucleic acid based diagnostics Kim, YeJi Lee, Won-Nyoung Yoo, Hyun Jin Baek, Changyoon Min, Junhong Biochip J Original Article Recently, a variety of methods, so called “direct buffer”, have been developed to utilize nucleic acid in the blood for the measurement of infectious bacteria and virus without any equipment in the field. In here, we first investigated the individual and combinatory effects of candidate chemicals which might be composed of the direct buffer on the PCR inhibition reduction of main compositions in whole blood. The long and short PEGs, Na(2)SO(4) and GuSCN were selected as representative kosmotropic and chaotropic salts, respectively. MgCl(2) were chosen as divalent cation source and NaOH was used to control blood pH. The effect of common non-ionic biological detergent was tested with Triton X-100 and SDS (Sodium Dodecyl sulfate) was chosen as anionic detergent. These results could provide a foundation for the development of sample preparation solution in nucleic acid based diagnostic field. As a result, the direct buffer developed in this study was able to detect viruses with a concentration of 10(2) pfu/100 μL of whole blood by a very simple method. The Korean BioChip Society (KBCS) 2017-12-12 2017 /pmc/articles/PMC7097592/ /pubmed/32226588 http://dx.doi.org/10.1007/s13206-017-1401-y Text en © The Korean BioChip Society and Springer-Verlag GmbH Germany, part of Springer Nature 2017 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Original Article Kim, YeJi Lee, Won-Nyoung Yoo, Hyun Jin Baek, Changyoon Min, Junhong Direct buffer composition of blood pre-process for nucleic acid based diagnostics |
title | Direct buffer composition of blood pre-process for nucleic acid based diagnostics |
title_full | Direct buffer composition of blood pre-process for nucleic acid based diagnostics |
title_fullStr | Direct buffer composition of blood pre-process for nucleic acid based diagnostics |
title_full_unstemmed | Direct buffer composition of blood pre-process for nucleic acid based diagnostics |
title_short | Direct buffer composition of blood pre-process for nucleic acid based diagnostics |
title_sort | direct buffer composition of blood pre-process for nucleic acid based diagnostics |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7097592/ https://www.ncbi.nlm.nih.gov/pubmed/32226588 http://dx.doi.org/10.1007/s13206-017-1401-y |
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