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Direct buffer composition of blood pre-process for nucleic acid based diagnostics

Recently, a variety of methods, so called “direct buffer”, have been developed to utilize nucleic acid in the blood for the measurement of infectious bacteria and virus without any equipment in the field. In here, we first investigated the individual and combinatory effects of candidate chemicals wh...

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Autores principales: Kim, YeJi, Lee, Won-Nyoung, Yoo, Hyun Jin, Baek, Changyoon, Min, Junhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean BioChip Society (KBCS) 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7097592/
https://www.ncbi.nlm.nih.gov/pubmed/32226588
http://dx.doi.org/10.1007/s13206-017-1401-y
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author Kim, YeJi
Lee, Won-Nyoung
Yoo, Hyun Jin
Baek, Changyoon
Min, Junhong
author_facet Kim, YeJi
Lee, Won-Nyoung
Yoo, Hyun Jin
Baek, Changyoon
Min, Junhong
author_sort Kim, YeJi
collection PubMed
description Recently, a variety of methods, so called “direct buffer”, have been developed to utilize nucleic acid in the blood for the measurement of infectious bacteria and virus without any equipment in the field. In here, we first investigated the individual and combinatory effects of candidate chemicals which might be composed of the direct buffer on the PCR inhibition reduction of main compositions in whole blood. The long and short PEGs, Na(2)SO(4) and GuSCN were selected as representative kosmotropic and chaotropic salts, respectively. MgCl(2) were chosen as divalent cation source and NaOH was used to control blood pH. The effect of common non-ionic biological detergent was tested with Triton X-100 and SDS (Sodium Dodecyl sulfate) was chosen as anionic detergent. These results could provide a foundation for the development of sample preparation solution in nucleic acid based diagnostic field. As a result, the direct buffer developed in this study was able to detect viruses with a concentration of 10(2) pfu/100 μL of whole blood by a very simple method.
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spelling pubmed-70975922020-03-26 Direct buffer composition of blood pre-process for nucleic acid based diagnostics Kim, YeJi Lee, Won-Nyoung Yoo, Hyun Jin Baek, Changyoon Min, Junhong Biochip J Original Article Recently, a variety of methods, so called “direct buffer”, have been developed to utilize nucleic acid in the blood for the measurement of infectious bacteria and virus without any equipment in the field. In here, we first investigated the individual and combinatory effects of candidate chemicals which might be composed of the direct buffer on the PCR inhibition reduction of main compositions in whole blood. The long and short PEGs, Na(2)SO(4) and GuSCN were selected as representative kosmotropic and chaotropic salts, respectively. MgCl(2) were chosen as divalent cation source and NaOH was used to control blood pH. The effect of common non-ionic biological detergent was tested with Triton X-100 and SDS (Sodium Dodecyl sulfate) was chosen as anionic detergent. These results could provide a foundation for the development of sample preparation solution in nucleic acid based diagnostic field. As a result, the direct buffer developed in this study was able to detect viruses with a concentration of 10(2) pfu/100 μL of whole blood by a very simple method. The Korean BioChip Society (KBCS) 2017-12-12 2017 /pmc/articles/PMC7097592/ /pubmed/32226588 http://dx.doi.org/10.1007/s13206-017-1401-y Text en © The Korean BioChip Society and Springer-Verlag GmbH Germany, part of Springer Nature 2017 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Kim, YeJi
Lee, Won-Nyoung
Yoo, Hyun Jin
Baek, Changyoon
Min, Junhong
Direct buffer composition of blood pre-process for nucleic acid based diagnostics
title Direct buffer composition of blood pre-process for nucleic acid based diagnostics
title_full Direct buffer composition of blood pre-process for nucleic acid based diagnostics
title_fullStr Direct buffer composition of blood pre-process for nucleic acid based diagnostics
title_full_unstemmed Direct buffer composition of blood pre-process for nucleic acid based diagnostics
title_short Direct buffer composition of blood pre-process for nucleic acid based diagnostics
title_sort direct buffer composition of blood pre-process for nucleic acid based diagnostics
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7097592/
https://www.ncbi.nlm.nih.gov/pubmed/32226588
http://dx.doi.org/10.1007/s13206-017-1401-y
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