Cargando…
Structural Assessment of Hydrogen Bonds on Methylpentynol–Azide Clusters To Achieve Regiochemical Outcome of 1,3-Dipolar Cycloaddition Reactions Using Density Functional Theory
[Image: see text] This study was focused on the geometries and properties of the structural isomers obtained from a random walk of methylpentynol–HN(3) clusters. The theoretical aspects of hydrogen bonding effects on the discussed 1,3-dipolar cycloaddition (1,3-DC) reactions [between methylpentynol...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2020
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7098023/ https://www.ncbi.nlm.nih.gov/pubmed/32226877 http://dx.doi.org/10.1021/acsomega.9b04333 |
_version_ | 1783511102833819648 |
---|---|
author | Hashemi, Marzieh Taherpour, Avat Arman |
author_facet | Hashemi, Marzieh Taherpour, Avat Arman |
author_sort | Hashemi, Marzieh |
collection | PubMed |
description | [Image: see text] This study was focused on the geometries and properties of the structural isomers obtained from a random walk of methylpentynol–HN(3) clusters. The theoretical aspects of hydrogen bonding effects on the discussed 1,3-dipolar cycloaddition (1,3-DC) reactions [between methylpentynol (a) as a dipolarophile and azide (b) as a 1,3-dipole] have shown regioselective output concepts. The dipolarophile methylpentynol (a) was applied for the treatment of insomnia. Both methylpentynol (a) and azide (b) can be H-bond acceptor and H-bond donor agents. Because of this trait of them, structures of H-bonding arrays (c–f) and methylpentynol–azide clusters (g–m) can be probable. In this work, regioselectivity of the 1,3-DC reaction [between methylpentynol (a) as a dipolarophile and azide (b) as a 1,3-dipole] was determined based on these structures (c–m) using density functional theory (DFT). The energy levels of the reactants (a and b) and the structures of H-bonding arrays (c–f), methylpentynol–azide clusters (g–m), transition states, and products (1 and 2) were studied, and also, the free energies of the reaction (Δ(r)G and ΔG(#), in kcal mol(–1)) and rate constants were determined using Eyring’s equation (k). Structural data were calculated and obtained by the DFT/B3LYP method. Seven different basis sets have been used to obtain the most appropriate results from comparison of data. |
format | Online Article Text |
id | pubmed-7098023 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-70980232020-03-27 Structural Assessment of Hydrogen Bonds on Methylpentynol–Azide Clusters To Achieve Regiochemical Outcome of 1,3-Dipolar Cycloaddition Reactions Using Density Functional Theory Hashemi, Marzieh Taherpour, Avat Arman ACS Omega [Image: see text] This study was focused on the geometries and properties of the structural isomers obtained from a random walk of methylpentynol–HN(3) clusters. The theoretical aspects of hydrogen bonding effects on the discussed 1,3-dipolar cycloaddition (1,3-DC) reactions [between methylpentynol (a) as a dipolarophile and azide (b) as a 1,3-dipole] have shown regioselective output concepts. The dipolarophile methylpentynol (a) was applied for the treatment of insomnia. Both methylpentynol (a) and azide (b) can be H-bond acceptor and H-bond donor agents. Because of this trait of them, structures of H-bonding arrays (c–f) and methylpentynol–azide clusters (g–m) can be probable. In this work, regioselectivity of the 1,3-DC reaction [between methylpentynol (a) as a dipolarophile and azide (b) as a 1,3-dipole] was determined based on these structures (c–m) using density functional theory (DFT). The energy levels of the reactants (a and b) and the structures of H-bonding arrays (c–f), methylpentynol–azide clusters (g–m), transition states, and products (1 and 2) were studied, and also, the free energies of the reaction (Δ(r)G and ΔG(#), in kcal mol(–1)) and rate constants were determined using Eyring’s equation (k). Structural data were calculated and obtained by the DFT/B3LYP method. Seven different basis sets have been used to obtain the most appropriate results from comparison of data. American Chemical Society 2020-03-10 /pmc/articles/PMC7098023/ /pubmed/32226877 http://dx.doi.org/10.1021/acsomega.9b04333 Text en Copyright © 2020 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Hashemi, Marzieh Taherpour, Avat Arman Structural Assessment of Hydrogen Bonds on Methylpentynol–Azide Clusters To Achieve Regiochemical Outcome of 1,3-Dipolar Cycloaddition Reactions Using Density Functional Theory |
title | Structural Assessment of Hydrogen
Bonds on Methylpentynol–Azide Clusters To Achieve Regiochemical
Outcome of 1,3-Dipolar Cycloaddition Reactions Using Density Functional
Theory |
title_full | Structural Assessment of Hydrogen
Bonds on Methylpentynol–Azide Clusters To Achieve Regiochemical
Outcome of 1,3-Dipolar Cycloaddition Reactions Using Density Functional
Theory |
title_fullStr | Structural Assessment of Hydrogen
Bonds on Methylpentynol–Azide Clusters To Achieve Regiochemical
Outcome of 1,3-Dipolar Cycloaddition Reactions Using Density Functional
Theory |
title_full_unstemmed | Structural Assessment of Hydrogen
Bonds on Methylpentynol–Azide Clusters To Achieve Regiochemical
Outcome of 1,3-Dipolar Cycloaddition Reactions Using Density Functional
Theory |
title_short | Structural Assessment of Hydrogen
Bonds on Methylpentynol–Azide Clusters To Achieve Regiochemical
Outcome of 1,3-Dipolar Cycloaddition Reactions Using Density Functional
Theory |
title_sort | structural assessment of hydrogen
bonds on methylpentynol–azide clusters to achieve regiochemical
outcome of 1,3-dipolar cycloaddition reactions using density functional
theory |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7098023/ https://www.ncbi.nlm.nih.gov/pubmed/32226877 http://dx.doi.org/10.1021/acsomega.9b04333 |
work_keys_str_mv | AT hashemimarzieh structuralassessmentofhydrogenbondsonmethylpentynolazideclusterstoachieveregiochemicaloutcomeof13dipolarcycloadditionreactionsusingdensityfunctionaltheory AT taherpouravatarman structuralassessmentofhydrogenbondsonmethylpentynolazideclusterstoachieveregiochemicaloutcomeof13dipolarcycloadditionreactionsusingdensityfunctionaltheory |