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Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy
In this study, we propose a deep-learning-based method to correct motion artifacts in optical resolution photoacoustic microscopy (OR-PAM). The method is a convolutional neural network that establishes an end-to-end map from input raw data with motion artifacts to output corrected images. First, we...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Singapore
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7099543/ https://www.ncbi.nlm.nih.gov/pubmed/32240397 http://dx.doi.org/10.1186/s42492-019-0022-9 |
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author | Chen, Xingxing Qi, Weizhi Xi, Lei |
author_facet | Chen, Xingxing Qi, Weizhi Xi, Lei |
author_sort | Chen, Xingxing |
collection | PubMed |
description | In this study, we propose a deep-learning-based method to correct motion artifacts in optical resolution photoacoustic microscopy (OR-PAM). The method is a convolutional neural network that establishes an end-to-end map from input raw data with motion artifacts to output corrected images. First, we performed simulation studies to evaluate the feasibility and effectiveness of the proposed method. Second, we employed this method to process images of rat brain vessels with multiple motion artifacts to evaluate its performance for in vivo applications. The results demonstrate that this method works well for both large blood vessels and capillary networks. In comparison with traditional methods, the proposed method in this study can be easily modified to satisfy different scenarios of motion corrections in OR-PAM by revising the training sets. |
format | Online Article Text |
id | pubmed-7099543 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Springer Singapore |
record_format | MEDLINE/PubMed |
spelling | pubmed-70995432020-03-31 Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy Chen, Xingxing Qi, Weizhi Xi, Lei Vis Comput Ind Biomed Art Original Article In this study, we propose a deep-learning-based method to correct motion artifacts in optical resolution photoacoustic microscopy (OR-PAM). The method is a convolutional neural network that establishes an end-to-end map from input raw data with motion artifacts to output corrected images. First, we performed simulation studies to evaluate the feasibility and effectiveness of the proposed method. Second, we employed this method to process images of rat brain vessels with multiple motion artifacts to evaluate its performance for in vivo applications. The results demonstrate that this method works well for both large blood vessels and capillary networks. In comparison with traditional methods, the proposed method in this study can be easily modified to satisfy different scenarios of motion corrections in OR-PAM by revising the training sets. Springer Singapore 2019-10-29 /pmc/articles/PMC7099543/ /pubmed/32240397 http://dx.doi.org/10.1186/s42492-019-0022-9 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Article Chen, Xingxing Qi, Weizhi Xi, Lei Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy |
title | Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy |
title_full | Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy |
title_fullStr | Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy |
title_full_unstemmed | Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy |
title_short | Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy |
title_sort | deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7099543/ https://www.ncbi.nlm.nih.gov/pubmed/32240397 http://dx.doi.org/10.1186/s42492-019-0022-9 |
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