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Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy

In this study, we propose a deep-learning-based method to correct motion artifacts in optical resolution photoacoustic microscopy (OR-PAM). The method is a convolutional neural network that establishes an end-to-end map from input raw data with motion artifacts to output corrected images. First, we...

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Detalles Bibliográficos
Autores principales: Chen, Xingxing, Qi, Weizhi, Xi, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Singapore 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7099543/
https://www.ncbi.nlm.nih.gov/pubmed/32240397
http://dx.doi.org/10.1186/s42492-019-0022-9
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author Chen, Xingxing
Qi, Weizhi
Xi, Lei
author_facet Chen, Xingxing
Qi, Weizhi
Xi, Lei
author_sort Chen, Xingxing
collection PubMed
description In this study, we propose a deep-learning-based method to correct motion artifacts in optical resolution photoacoustic microscopy (OR-PAM). The method is a convolutional neural network that establishes an end-to-end map from input raw data with motion artifacts to output corrected images. First, we performed simulation studies to evaluate the feasibility and effectiveness of the proposed method. Second, we employed this method to process images of rat brain vessels with multiple motion artifacts to evaluate its performance for in vivo applications. The results demonstrate that this method works well for both large blood vessels and capillary networks. In comparison with traditional methods, the proposed method in this study can be easily modified to satisfy different scenarios of motion corrections in OR-PAM by revising the training sets.
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spelling pubmed-70995432020-03-31 Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy Chen, Xingxing Qi, Weizhi Xi, Lei Vis Comput Ind Biomed Art Original Article In this study, we propose a deep-learning-based method to correct motion artifacts in optical resolution photoacoustic microscopy (OR-PAM). The method is a convolutional neural network that establishes an end-to-end map from input raw data with motion artifacts to output corrected images. First, we performed simulation studies to evaluate the feasibility and effectiveness of the proposed method. Second, we employed this method to process images of rat brain vessels with multiple motion artifacts to evaluate its performance for in vivo applications. The results demonstrate that this method works well for both large blood vessels and capillary networks. In comparison with traditional methods, the proposed method in this study can be easily modified to satisfy different scenarios of motion corrections in OR-PAM by revising the training sets. Springer Singapore 2019-10-29 /pmc/articles/PMC7099543/ /pubmed/32240397 http://dx.doi.org/10.1186/s42492-019-0022-9 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Chen, Xingxing
Qi, Weizhi
Xi, Lei
Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy
title Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy
title_full Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy
title_fullStr Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy
title_full_unstemmed Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy
title_short Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy
title_sort deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7099543/
https://www.ncbi.nlm.nih.gov/pubmed/32240397
http://dx.doi.org/10.1186/s42492-019-0022-9
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