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Rapid Detection of Avian Infectious Bronchitis Virus by Reverse Transcriptase-Loop Mediated Isothermal Amplification

A reverse-transcription loop mediated isothermal amplification (RT-LAMP) was developed for rapid diagnosis of infectious bronchitis (IB) in poultry by targeting the spike protein 2 gene (S2). RT-LAMP primers were designed for IBV-S2 targets and optimized to run at 60 °C for 45 min. As compared with...

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Autores principales: Chandrasekar, A., Raja, A., Dhinakar Raj, G., Thangavelu, A., Kumanan, K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer India 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7100760/
https://www.ncbi.nlm.nih.gov/pubmed/32226206
http://dx.doi.org/10.1007/s40011-015-0490-4
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author Chandrasekar, A.
Raja, A.
Dhinakar Raj, G.
Thangavelu, A.
Kumanan, K.
author_facet Chandrasekar, A.
Raja, A.
Dhinakar Raj, G.
Thangavelu, A.
Kumanan, K.
author_sort Chandrasekar, A.
collection PubMed
description A reverse-transcription loop mediated isothermal amplification (RT-LAMP) was developed for rapid diagnosis of infectious bronchitis (IB) in poultry by targeting the spike protein 2 gene (S2). RT-LAMP primers were designed for IBV-S2 targets and optimized to run at 60 °C for 45 min. As compared with RT-PCR, RT-LAMP was 100 times more sensitive for IBV-S2 gene. RT-LAMP showed specific amplification with IB viral genome but not with other avian respiratory pathogens due to their mismatching with IBV-S2-RT-LAMP primers. RT-LAMP reaction products were visually detected by the addition of propidium iodide stain. Out of 102 field samples tested for detection of IBV, RT-LAMP detected IBV in 12 samples for S2 gene whereas RT-PCR detected IBV in six samples for S2 gene. The sensitivity of the RT-LAMP was 100 % and the specificity was 94 % for S2 gene. Since the developed RT-LAMP to detect IBV is simple, rapid, sensitive and specific, it can be a useful diagnostic tool for detection of IB in poultry in less equipped laboratories and in field conditions.
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spelling pubmed-71007602020-03-27 Rapid Detection of Avian Infectious Bronchitis Virus by Reverse Transcriptase-Loop Mediated Isothermal Amplification Chandrasekar, A. Raja, A. Dhinakar Raj, G. Thangavelu, A. Kumanan, K. Proc Natl Acad Sci India Sect B Biol Sci Research Article A reverse-transcription loop mediated isothermal amplification (RT-LAMP) was developed for rapid diagnosis of infectious bronchitis (IB) in poultry by targeting the spike protein 2 gene (S2). RT-LAMP primers were designed for IBV-S2 targets and optimized to run at 60 °C for 45 min. As compared with RT-PCR, RT-LAMP was 100 times more sensitive for IBV-S2 gene. RT-LAMP showed specific amplification with IB viral genome but not with other avian respiratory pathogens due to their mismatching with IBV-S2-RT-LAMP primers. RT-LAMP reaction products were visually detected by the addition of propidium iodide stain. Out of 102 field samples tested for detection of IBV, RT-LAMP detected IBV in 12 samples for S2 gene whereas RT-PCR detected IBV in six samples for S2 gene. The sensitivity of the RT-LAMP was 100 % and the specificity was 94 % for S2 gene. Since the developed RT-LAMP to detect IBV is simple, rapid, sensitive and specific, it can be a useful diagnostic tool for detection of IB in poultry in less equipped laboratories and in field conditions. Springer India 2015-03-04 2015 /pmc/articles/PMC7100760/ /pubmed/32226206 http://dx.doi.org/10.1007/s40011-015-0490-4 Text en © The National Academy of Sciences, India 2015 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Research Article
Chandrasekar, A.
Raja, A.
Dhinakar Raj, G.
Thangavelu, A.
Kumanan, K.
Rapid Detection of Avian Infectious Bronchitis Virus by Reverse Transcriptase-Loop Mediated Isothermal Amplification
title Rapid Detection of Avian Infectious Bronchitis Virus by Reverse Transcriptase-Loop Mediated Isothermal Amplification
title_full Rapid Detection of Avian Infectious Bronchitis Virus by Reverse Transcriptase-Loop Mediated Isothermal Amplification
title_fullStr Rapid Detection of Avian Infectious Bronchitis Virus by Reverse Transcriptase-Loop Mediated Isothermal Amplification
title_full_unstemmed Rapid Detection of Avian Infectious Bronchitis Virus by Reverse Transcriptase-Loop Mediated Isothermal Amplification
title_short Rapid Detection of Avian Infectious Bronchitis Virus by Reverse Transcriptase-Loop Mediated Isothermal Amplification
title_sort rapid detection of avian infectious bronchitis virus by reverse transcriptase-loop mediated isothermal amplification
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7100760/
https://www.ncbi.nlm.nih.gov/pubmed/32226206
http://dx.doi.org/10.1007/s40011-015-0490-4
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