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Convolutional neural network for classification of two-dimensional array images generated from clinical information may support diagnosis of rheumatoid arthritis

This research aimed to study the application of deep learning to the diagnosis of rheumatoid arthritis (RA). Definite criteria or direct markers for diagnosing RA are lacking. Rheumatologists diagnose RA according to an integrated assessment based on scientific evidence and clinical experience. Our...

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Autores principales: Fukae, Jun, Isobe, Masato, Hattori, Toshiyuki, Fujieda, Yuichiro, Kono, Michihiro, Abe, Nobuya, Kitano, Akemi, Narita, Akihiro, Henmi, Mihoko, Sakamoto, Fumihiko, Aoki, Yuko, Ito, Takeya, Mitsuzaki, Akio, Matsuhashi, Megumi, Shimizu, Masato, Tanimura, Kazuhide, Sutherland, Kenneth, Kamishima, Tamotsu, Atsumi, Tatsuya, Koike, Takao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7101306/
https://www.ncbi.nlm.nih.gov/pubmed/32221385
http://dx.doi.org/10.1038/s41598-020-62634-3
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author Fukae, Jun
Isobe, Masato
Hattori, Toshiyuki
Fujieda, Yuichiro
Kono, Michihiro
Abe, Nobuya
Kitano, Akemi
Narita, Akihiro
Henmi, Mihoko
Sakamoto, Fumihiko
Aoki, Yuko
Ito, Takeya
Mitsuzaki, Akio
Matsuhashi, Megumi
Shimizu, Masato
Tanimura, Kazuhide
Sutherland, Kenneth
Kamishima, Tamotsu
Atsumi, Tatsuya
Koike, Takao
author_facet Fukae, Jun
Isobe, Masato
Hattori, Toshiyuki
Fujieda, Yuichiro
Kono, Michihiro
Abe, Nobuya
Kitano, Akemi
Narita, Akihiro
Henmi, Mihoko
Sakamoto, Fumihiko
Aoki, Yuko
Ito, Takeya
Mitsuzaki, Akio
Matsuhashi, Megumi
Shimizu, Masato
Tanimura, Kazuhide
Sutherland, Kenneth
Kamishima, Tamotsu
Atsumi, Tatsuya
Koike, Takao
author_sort Fukae, Jun
collection PubMed
description This research aimed to study the application of deep learning to the diagnosis of rheumatoid arthritis (RA). Definite criteria or direct markers for diagnosing RA are lacking. Rheumatologists diagnose RA according to an integrated assessment based on scientific evidence and clinical experience. Our novel idea was to convert various clinical information from patients into simple two-dimensional images and then use them to fine-tune a convolutional neural network (CNN) to classify RA or nonRA. We semi-quantitatively converted each type of clinical information to four coloured square images and arranged them as one image for each patient. One rheumatologist modified each patient’s clinical information to increase learning data. In total, 1037 images (252 RA, 785 nonRA) were used to fine-tune a pretrained CNN with transfer learning. For clinical data (10 RA, 40 nonRA), which were independent of the learning data and were used as testing data, we compared the classification ability of the fine-tuned CNN with that of three expert rheumatologists. Our simple system could potentially support RA diagnosis and therefore might be useful for screening RA in both specialised hospitals and general clinics. This study paves the way to enabling deep learning in the diagnosis of RA.
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spelling pubmed-71013062020-03-31 Convolutional neural network for classification of two-dimensional array images generated from clinical information may support diagnosis of rheumatoid arthritis Fukae, Jun Isobe, Masato Hattori, Toshiyuki Fujieda, Yuichiro Kono, Michihiro Abe, Nobuya Kitano, Akemi Narita, Akihiro Henmi, Mihoko Sakamoto, Fumihiko Aoki, Yuko Ito, Takeya Mitsuzaki, Akio Matsuhashi, Megumi Shimizu, Masato Tanimura, Kazuhide Sutherland, Kenneth Kamishima, Tamotsu Atsumi, Tatsuya Koike, Takao Sci Rep Article This research aimed to study the application of deep learning to the diagnosis of rheumatoid arthritis (RA). Definite criteria or direct markers for diagnosing RA are lacking. Rheumatologists diagnose RA according to an integrated assessment based on scientific evidence and clinical experience. Our novel idea was to convert various clinical information from patients into simple two-dimensional images and then use them to fine-tune a convolutional neural network (CNN) to classify RA or nonRA. We semi-quantitatively converted each type of clinical information to four coloured square images and arranged them as one image for each patient. One rheumatologist modified each patient’s clinical information to increase learning data. In total, 1037 images (252 RA, 785 nonRA) were used to fine-tune a pretrained CNN with transfer learning. For clinical data (10 RA, 40 nonRA), which were independent of the learning data and were used as testing data, we compared the classification ability of the fine-tuned CNN with that of three expert rheumatologists. Our simple system could potentially support RA diagnosis and therefore might be useful for screening RA in both specialised hospitals and general clinics. This study paves the way to enabling deep learning in the diagnosis of RA. Nature Publishing Group UK 2020-03-27 /pmc/articles/PMC7101306/ /pubmed/32221385 http://dx.doi.org/10.1038/s41598-020-62634-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Fukae, Jun
Isobe, Masato
Hattori, Toshiyuki
Fujieda, Yuichiro
Kono, Michihiro
Abe, Nobuya
Kitano, Akemi
Narita, Akihiro
Henmi, Mihoko
Sakamoto, Fumihiko
Aoki, Yuko
Ito, Takeya
Mitsuzaki, Akio
Matsuhashi, Megumi
Shimizu, Masato
Tanimura, Kazuhide
Sutherland, Kenneth
Kamishima, Tamotsu
Atsumi, Tatsuya
Koike, Takao
Convolutional neural network for classification of two-dimensional array images generated from clinical information may support diagnosis of rheumatoid arthritis
title Convolutional neural network for classification of two-dimensional array images generated from clinical information may support diagnosis of rheumatoid arthritis
title_full Convolutional neural network for classification of two-dimensional array images generated from clinical information may support diagnosis of rheumatoid arthritis
title_fullStr Convolutional neural network for classification of two-dimensional array images generated from clinical information may support diagnosis of rheumatoid arthritis
title_full_unstemmed Convolutional neural network for classification of two-dimensional array images generated from clinical information may support diagnosis of rheumatoid arthritis
title_short Convolutional neural network for classification of two-dimensional array images generated from clinical information may support diagnosis of rheumatoid arthritis
title_sort convolutional neural network for classification of two-dimensional array images generated from clinical information may support diagnosis of rheumatoid arthritis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7101306/
https://www.ncbi.nlm.nih.gov/pubmed/32221385
http://dx.doi.org/10.1038/s41598-020-62634-3
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