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A hybrid stochastic model of the budding yeast cell cycle
The growth and division of eukaryotic cells are regulated by complex, multi-scale networks. In this process, the mechanism of controlling cell-cycle progression has to be robust against inherent noise in the system. In this paper, a hybrid stochastic model is developed to study the effects of noise...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7101447/ https://www.ncbi.nlm.nih.gov/pubmed/32221305 http://dx.doi.org/10.1038/s41540-020-0126-z |
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author | Ahmadian, Mansooreh Tyson, John J. Peccoud, Jean Cao, Yang |
author_facet | Ahmadian, Mansooreh Tyson, John J. Peccoud, Jean Cao, Yang |
author_sort | Ahmadian, Mansooreh |
collection | PubMed |
description | The growth and division of eukaryotic cells are regulated by complex, multi-scale networks. In this process, the mechanism of controlling cell-cycle progression has to be robust against inherent noise in the system. In this paper, a hybrid stochastic model is developed to study the effects of noise on the control mechanism of the budding yeast cell cycle. The modeling approach leverages, in a single multi-scale model, the advantages of two regimes: (1) the computational efficiency of a deterministic approach, and (2) the accuracy of stochastic simulations. Our results show that this hybrid stochastic model achieves high computational efficiency while generating simulation results that match very well with published experimental measurements. |
format | Online Article Text |
id | pubmed-7101447 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-71014472020-04-06 A hybrid stochastic model of the budding yeast cell cycle Ahmadian, Mansooreh Tyson, John J. Peccoud, Jean Cao, Yang NPJ Syst Biol Appl Article The growth and division of eukaryotic cells are regulated by complex, multi-scale networks. In this process, the mechanism of controlling cell-cycle progression has to be robust against inherent noise in the system. In this paper, a hybrid stochastic model is developed to study the effects of noise on the control mechanism of the budding yeast cell cycle. The modeling approach leverages, in a single multi-scale model, the advantages of two regimes: (1) the computational efficiency of a deterministic approach, and (2) the accuracy of stochastic simulations. Our results show that this hybrid stochastic model achieves high computational efficiency while generating simulation results that match very well with published experimental measurements. Nature Publishing Group UK 2020-03-27 /pmc/articles/PMC7101447/ /pubmed/32221305 http://dx.doi.org/10.1038/s41540-020-0126-z Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Ahmadian, Mansooreh Tyson, John J. Peccoud, Jean Cao, Yang A hybrid stochastic model of the budding yeast cell cycle |
title | A hybrid stochastic model of the budding yeast cell cycle |
title_full | A hybrid stochastic model of the budding yeast cell cycle |
title_fullStr | A hybrid stochastic model of the budding yeast cell cycle |
title_full_unstemmed | A hybrid stochastic model of the budding yeast cell cycle |
title_short | A hybrid stochastic model of the budding yeast cell cycle |
title_sort | hybrid stochastic model of the budding yeast cell cycle |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7101447/ https://www.ncbi.nlm.nih.gov/pubmed/32221305 http://dx.doi.org/10.1038/s41540-020-0126-z |
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