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Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision
High-frequency oscillations >80 Hz (HFOs) have unique features distinguishing them from spikes and artifactual components that can be well-evidenced in the time-frequency representations. We introduce an unsupervised HFO detector that uses computer-vision algorithms to detect HFO landmarks on two...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7104802/ https://www.ncbi.nlm.nih.gov/pubmed/32265622 http://dx.doi.org/10.3389/fnins.2020.00183 |
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author | Donos, Cristian Mîndruţă, Ioana Barborica, Andrei |
author_facet | Donos, Cristian Mîndruţă, Ioana Barborica, Andrei |
author_sort | Donos, Cristian |
collection | PubMed |
description | High-frequency oscillations >80 Hz (HFOs) have unique features distinguishing them from spikes and artifactual components that can be well-evidenced in the time-frequency representations. We introduce an unsupervised HFO detector that uses computer-vision algorithms to detect HFO landmarks on two-dimensional (2D) time-frequency maps. To validate the detector, we introduce an analytical model of the HFO based on a sinewave having a Gaussian envelope, for which analytical equations in time-frequency space can be derived, allowing us to establish a direct correspondence between common HFO detection criteria in the time domain with the ones in the frequency domain, used by the computer-vision detection algorithm. The detector identifies potential HFO events on the time-frequency representation, which are classified as true HFOs if criteria regarding the HFO's frequency, amplitude, and duration are met. The detector is validated on simulated HFOs according to the analytical model, in the presence of noise, with different signal-to-noise ratios (SNRs) ranging from −9 to 0 dB. The detector's sensitivity was 0.64 at an SNR of −9 dB, 0.98 at −6 dB, and >0.99 at −3 dB and 0 dB, while its positive prediction value was >0.95, regardless of the SNR. Using the same simulation dataset, our detector is benchmarked against four previously published HFO detectors. The F-measure, a combined metric that takes into account both sensitivity and positive prediction value, was used to compare detection algorithms. Our detector surpassed the other detectors at −6, −3, and 0 dB and had the second best F-score at −9 dB SNR after the MNI detector (0.77 vs. 0.83). The ability to detect HFOs in clinical recordings has been tested on a set of 36 intracranial electroencephalogram (EEG) channels in six patients, with 89% of the detections being validated by two independent reviewers. The results demonstrate that the unsupervised detection of HFOs based on their 2D features in time-frequency maps is feasible and has a performance comparable or better than the most used HFO detectors. |
format | Online Article Text |
id | pubmed-7104802 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-71048022020-04-07 Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision Donos, Cristian Mîndruţă, Ioana Barborica, Andrei Front Neurosci Neuroscience High-frequency oscillations >80 Hz (HFOs) have unique features distinguishing them from spikes and artifactual components that can be well-evidenced in the time-frequency representations. We introduce an unsupervised HFO detector that uses computer-vision algorithms to detect HFO landmarks on two-dimensional (2D) time-frequency maps. To validate the detector, we introduce an analytical model of the HFO based on a sinewave having a Gaussian envelope, for which analytical equations in time-frequency space can be derived, allowing us to establish a direct correspondence between common HFO detection criteria in the time domain with the ones in the frequency domain, used by the computer-vision detection algorithm. The detector identifies potential HFO events on the time-frequency representation, which are classified as true HFOs if criteria regarding the HFO's frequency, amplitude, and duration are met. The detector is validated on simulated HFOs according to the analytical model, in the presence of noise, with different signal-to-noise ratios (SNRs) ranging from −9 to 0 dB. The detector's sensitivity was 0.64 at an SNR of −9 dB, 0.98 at −6 dB, and >0.99 at −3 dB and 0 dB, while its positive prediction value was >0.95, regardless of the SNR. Using the same simulation dataset, our detector is benchmarked against four previously published HFO detectors. The F-measure, a combined metric that takes into account both sensitivity and positive prediction value, was used to compare detection algorithms. Our detector surpassed the other detectors at −6, −3, and 0 dB and had the second best F-score at −9 dB SNR after the MNI detector (0.77 vs. 0.83). The ability to detect HFOs in clinical recordings has been tested on a set of 36 intracranial electroencephalogram (EEG) channels in six patients, with 89% of the detections being validated by two independent reviewers. The results demonstrate that the unsupervised detection of HFOs based on their 2D features in time-frequency maps is feasible and has a performance comparable or better than the most used HFO detectors. Frontiers Media S.A. 2020-03-23 /pmc/articles/PMC7104802/ /pubmed/32265622 http://dx.doi.org/10.3389/fnins.2020.00183 Text en Copyright © 2020 Donos, Mîndruţă and Barborica. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Donos, Cristian Mîndruţă, Ioana Barborica, Andrei Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision |
title | Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision |
title_full | Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision |
title_fullStr | Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision |
title_full_unstemmed | Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision |
title_short | Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision |
title_sort | unsupervised detection of high-frequency oscillations using time-frequency maps and computer vision |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7104802/ https://www.ncbi.nlm.nih.gov/pubmed/32265622 http://dx.doi.org/10.3389/fnins.2020.00183 |
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