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DRodVir: A resource for exploring the virome diversity in rodents

Emerging zoonotic diseases have received tremendous interests in recent years, as they pose a significant threat to human health, animal welfare, and economic stability. A high proportion of zoonoses originate from wildlife reservoirs. Rodents are the most numerous, widespread, and diverse group of...

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Detalles Bibliográficos
Autores principales: Chen, Lihong, Liu, Bo, Wu, Zhiqiang, Jin, Qi, Yang, Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, and Genetics Society of China. Published by Elsevier Limited and Science Press. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7105198/
https://www.ncbi.nlm.nih.gov/pubmed/28533016
http://dx.doi.org/10.1016/j.jgg.2017.04.004
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author Chen, Lihong
Liu, Bo
Wu, Zhiqiang
Jin, Qi
Yang, Jian
author_facet Chen, Lihong
Liu, Bo
Wu, Zhiqiang
Jin, Qi
Yang, Jian
author_sort Chen, Lihong
collection PubMed
description Emerging zoonotic diseases have received tremendous interests in recent years, as they pose a significant threat to human health, animal welfare, and economic stability. A high proportion of zoonoses originate from wildlife reservoirs. Rodents are the most numerous, widespread, and diverse group of mammals on the earth and are reservoirs for many zoonotic viruses responsible for significant morbidity and mortality. A better understanding of virome diversity in rodents would be of importance for researchers and professionals in the field. Therefore, we developed the DRodVir database (http://www.mgc.ac.cn/DRodVir/), a comprehensive, up-to-date, and well-curated repository of rodent-associated animal viruses. The database currently covers 7690 sequences from 5491 rodent-associated mammal viruses of 26 viral families detected from 194 rodent species in 93 countries worldwide. In addition to virus sequences, the database provides detailed information on related samples and host rodents, as well as a set of online analytical tools for text query, BLAST search and phylogenetic reconstruction. The DRodVir database will help virologists better understand the virome diversity of rodents. Moreover, it will be a valuable tool for epidemiologists and zoologists for easy monitoring and tracking of the current and future zoonotic diseases. As a data application example, we further compared the current status of rodent-associated viruses with bat-associated viruses to highlight the necessity for including additional host species and geographic regions in future investigations, which will help us achieve a better understanding of the virome diversities in the two major reservoirs of emerging zoonotic infectious diseases.
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spelling pubmed-71051982020-03-31 DRodVir: A resource for exploring the virome diversity in rodents Chen, Lihong Liu, Bo Wu, Zhiqiang Jin, Qi Yang, Jian J Genet Genomics Article Emerging zoonotic diseases have received tremendous interests in recent years, as they pose a significant threat to human health, animal welfare, and economic stability. A high proportion of zoonoses originate from wildlife reservoirs. Rodents are the most numerous, widespread, and diverse group of mammals on the earth and are reservoirs for many zoonotic viruses responsible for significant morbidity and mortality. A better understanding of virome diversity in rodents would be of importance for researchers and professionals in the field. Therefore, we developed the DRodVir database (http://www.mgc.ac.cn/DRodVir/), a comprehensive, up-to-date, and well-curated repository of rodent-associated animal viruses. The database currently covers 7690 sequences from 5491 rodent-associated mammal viruses of 26 viral families detected from 194 rodent species in 93 countries worldwide. In addition to virus sequences, the database provides detailed information on related samples and host rodents, as well as a set of online analytical tools for text query, BLAST search and phylogenetic reconstruction. The DRodVir database will help virologists better understand the virome diversity of rodents. Moreover, it will be a valuable tool for epidemiologists and zoologists for easy monitoring and tracking of the current and future zoonotic diseases. As a data application example, we further compared the current status of rodent-associated viruses with bat-associated viruses to highlight the necessity for including additional host species and geographic regions in future investigations, which will help us achieve a better understanding of the virome diversities in the two major reservoirs of emerging zoonotic infectious diseases. Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, and Genetics Society of China. Published by Elsevier Limited and Science Press. 2017-05-20 2017-05-03 /pmc/articles/PMC7105198/ /pubmed/28533016 http://dx.doi.org/10.1016/j.jgg.2017.04.004 Text en Copyright © 2017, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, and Genetics Society of China. Published by Elsevier Limited and Science Press. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Chen, Lihong
Liu, Bo
Wu, Zhiqiang
Jin, Qi
Yang, Jian
DRodVir: A resource for exploring the virome diversity in rodents
title DRodVir: A resource for exploring the virome diversity in rodents
title_full DRodVir: A resource for exploring the virome diversity in rodents
title_fullStr DRodVir: A resource for exploring the virome diversity in rodents
title_full_unstemmed DRodVir: A resource for exploring the virome diversity in rodents
title_short DRodVir: A resource for exploring the virome diversity in rodents
title_sort drodvir: a resource for exploring the virome diversity in rodents
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7105198/
https://www.ncbi.nlm.nih.gov/pubmed/28533016
http://dx.doi.org/10.1016/j.jgg.2017.04.004
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