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Ability of near-infrared spectroscopy and chemometrics to predict the age of mosquitoes reared under different conditions

BACKGROUND: Practical, field-ready age-grading tools for mosquito vectors of disease are urgently needed because of the impact that daily survival has on vectorial capacity. Previous studies have shown that near-infrared spectroscopy (NIRS), in combination with chemometrics and predictive modeling,...

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Autores principales: Ong, Oselyne T. W., Kho, Elise A., Esperança, Pedro M., Freebairn, Chris, Dowell, Floyd E., Devine, Gregor J., Churcher, Thomas S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7106667/
https://www.ncbi.nlm.nih.gov/pubmed/32228670
http://dx.doi.org/10.1186/s13071-020-04031-3
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author Ong, Oselyne T. W.
Kho, Elise A.
Esperança, Pedro M.
Freebairn, Chris
Dowell, Floyd E.
Devine, Gregor J.
Churcher, Thomas S.
author_facet Ong, Oselyne T. W.
Kho, Elise A.
Esperança, Pedro M.
Freebairn, Chris
Dowell, Floyd E.
Devine, Gregor J.
Churcher, Thomas S.
author_sort Ong, Oselyne T. W.
collection PubMed
description BACKGROUND: Practical, field-ready age-grading tools for mosquito vectors of disease are urgently needed because of the impact that daily survival has on vectorial capacity. Previous studies have shown that near-infrared spectroscopy (NIRS), in combination with chemometrics and predictive modeling, can forecast the age of laboratory-reared mosquitoes with moderate to high accuracy. It remains unclear whether the technique has utility for identifying shifts in the age structure of wild-caught mosquitoes. Here we investigate whether models derived from the laboratory strain of mosquitoes can be used to predict the age of mosquitoes grown from pupae collected in the field. METHODS: NIRS data from adult female Aedes albopictus mosquitoes reared in the laboratory (2, 5, 8, 12 and 15 days-old) were analysed against spectra from mosquitoes emerging from wild-caught pupae (1, 7 and 14 days-old). Different partial least squares (PLS) regression methods trained on spectra from laboratory mosquitoes were evaluated on their ability to predict the age of mosquitoes from more natural environments. RESULTS: Models trained on spectra from laboratory-reared material were able to predict the age of other laboratory-reared mosquitoes with moderate accuracy and successfully differentiated all day 2 and 15 mosquitoes. Models derived with laboratory mosquitoes could not differentiate between field-derived age groups, with age predictions relatively indistinguishable for day 1–14. Pre-processing of spectral data and improving the PLS regression framework to avoid overfitting can increase accuracy, but predictions of mosquitoes reared in different environments remained poor. Principal components analysis confirms substantial spectral variations between laboratory and field-derived mosquitoes despite both originating from the same island population. CONCLUSIONS: Models trained on laboratory mosquitoes were able to predict ages of laboratory mosquitoes with good sensitivity and specificity though they were unable to predict age of field-derived mosquitoes. This study suggests that laboratory-reared mosquitoes do not capture enough environmental variation to accurately predict the age of the same species reared under different conditions. Further research is needed to explore alternative pre-processing methods and machine learning techniques, and to understand factors that affect absorbance in mosquitoes before field application using NIRS. [Image: see text]
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spelling pubmed-71066672020-04-01 Ability of near-infrared spectroscopy and chemometrics to predict the age of mosquitoes reared under different conditions Ong, Oselyne T. W. Kho, Elise A. Esperança, Pedro M. Freebairn, Chris Dowell, Floyd E. Devine, Gregor J. Churcher, Thomas S. Parasit Vectors Research BACKGROUND: Practical, field-ready age-grading tools for mosquito vectors of disease are urgently needed because of the impact that daily survival has on vectorial capacity. Previous studies have shown that near-infrared spectroscopy (NIRS), in combination with chemometrics and predictive modeling, can forecast the age of laboratory-reared mosquitoes with moderate to high accuracy. It remains unclear whether the technique has utility for identifying shifts in the age structure of wild-caught mosquitoes. Here we investigate whether models derived from the laboratory strain of mosquitoes can be used to predict the age of mosquitoes grown from pupae collected in the field. METHODS: NIRS data from adult female Aedes albopictus mosquitoes reared in the laboratory (2, 5, 8, 12 and 15 days-old) were analysed against spectra from mosquitoes emerging from wild-caught pupae (1, 7 and 14 days-old). Different partial least squares (PLS) regression methods trained on spectra from laboratory mosquitoes were evaluated on their ability to predict the age of mosquitoes from more natural environments. RESULTS: Models trained on spectra from laboratory-reared material were able to predict the age of other laboratory-reared mosquitoes with moderate accuracy and successfully differentiated all day 2 and 15 mosquitoes. Models derived with laboratory mosquitoes could not differentiate between field-derived age groups, with age predictions relatively indistinguishable for day 1–14. Pre-processing of spectral data and improving the PLS regression framework to avoid overfitting can increase accuracy, but predictions of mosquitoes reared in different environments remained poor. Principal components analysis confirms substantial spectral variations between laboratory and field-derived mosquitoes despite both originating from the same island population. CONCLUSIONS: Models trained on laboratory mosquitoes were able to predict ages of laboratory mosquitoes with good sensitivity and specificity though they were unable to predict age of field-derived mosquitoes. This study suggests that laboratory-reared mosquitoes do not capture enough environmental variation to accurately predict the age of the same species reared under different conditions. Further research is needed to explore alternative pre-processing methods and machine learning techniques, and to understand factors that affect absorbance in mosquitoes before field application using NIRS. [Image: see text] BioMed Central 2020-03-30 /pmc/articles/PMC7106667/ /pubmed/32228670 http://dx.doi.org/10.1186/s13071-020-04031-3 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Ong, Oselyne T. W.
Kho, Elise A.
Esperança, Pedro M.
Freebairn, Chris
Dowell, Floyd E.
Devine, Gregor J.
Churcher, Thomas S.
Ability of near-infrared spectroscopy and chemometrics to predict the age of mosquitoes reared under different conditions
title Ability of near-infrared spectroscopy and chemometrics to predict the age of mosquitoes reared under different conditions
title_full Ability of near-infrared spectroscopy and chemometrics to predict the age of mosquitoes reared under different conditions
title_fullStr Ability of near-infrared spectroscopy and chemometrics to predict the age of mosquitoes reared under different conditions
title_full_unstemmed Ability of near-infrared spectroscopy and chemometrics to predict the age of mosquitoes reared under different conditions
title_short Ability of near-infrared spectroscopy and chemometrics to predict the age of mosquitoes reared under different conditions
title_sort ability of near-infrared spectroscopy and chemometrics to predict the age of mosquitoes reared under different conditions
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7106667/
https://www.ncbi.nlm.nih.gov/pubmed/32228670
http://dx.doi.org/10.1186/s13071-020-04031-3
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