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DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity

For the first time, a nearly complete barcode library for European Gelechiidae is provided. DNA barcode sequences (COI gene – cytochrome c oxidase 1) from 751 out of 865 nominal species, belonging to 105 genera, were successfully recovered. A total of 741 species represented by specimens with sequen...

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Autores principales: Huemer, Peter, Karsholt, Ole, Aarvik, Leif, Berggren, Kai, Bidzilya, Oleksiy, Junnilainen, Jari, Landry, Jean-François, Mutanen, Marko, Nupponen, Kari, Segerer, Andreas, Šumpich, Jan, Wieser, Christian, Wiesmair, Benjamin, Hebert, Paul D.N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7109146/
https://www.ncbi.nlm.nih.gov/pubmed/32256152
http://dx.doi.org/10.3897/zookeys.921.49199
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author Huemer, Peter
Karsholt, Ole
Aarvik, Leif
Berggren, Kai
Bidzilya, Oleksiy
Junnilainen, Jari
Landry, Jean-François
Mutanen, Marko
Nupponen, Kari
Segerer, Andreas
Šumpich, Jan
Wieser, Christian
Wiesmair, Benjamin
Hebert, Paul D.N.
author_facet Huemer, Peter
Karsholt, Ole
Aarvik, Leif
Berggren, Kai
Bidzilya, Oleksiy
Junnilainen, Jari
Landry, Jean-François
Mutanen, Marko
Nupponen, Kari
Segerer, Andreas
Šumpich, Jan
Wieser, Christian
Wiesmair, Benjamin
Hebert, Paul D.N.
author_sort Huemer, Peter
collection PubMed
description For the first time, a nearly complete barcode library for European Gelechiidae is provided. DNA barcode sequences (COI gene – cytochrome c oxidase 1) from 751 out of 865 nominal species, belonging to 105 genera, were successfully recovered. A total of 741 species represented by specimens with sequences ≥ 500bp and an additional ten species represented by specimens with shorter sequences were used to produce 53 NJ trees. Intraspecific barcode divergence averaged only 0.54% whereas distance to the Nearest-Neighbour species averaged 5.58%. Of these, 710 species possessed unique DNA barcodes, but 31 species could not be reliably discriminated because of barcode sharing or partial barcode overlap. Species discrimination based on the Barcode Index System (BIN) was successful for 668 out of 723 species which clustered from minimum one to maximum 22 unique BINs. Fifty-five species shared a BIN with up to four species and identification from DNA barcode data is uncertain. Finally, 65 clusters with a unique BIN remained unidentified to species level. These putative taxa, as well as 114 nominal species with more than one BIN, suggest the presence of considerable cryptic diversity, cases which should be examined in future revisionary studies.
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spelling pubmed-71091462020-04-03 DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity Huemer, Peter Karsholt, Ole Aarvik, Leif Berggren, Kai Bidzilya, Oleksiy Junnilainen, Jari Landry, Jean-François Mutanen, Marko Nupponen, Kari Segerer, Andreas Šumpich, Jan Wieser, Christian Wiesmair, Benjamin Hebert, Paul D.N. Zookeys Research Article For the first time, a nearly complete barcode library for European Gelechiidae is provided. DNA barcode sequences (COI gene – cytochrome c oxidase 1) from 751 out of 865 nominal species, belonging to 105 genera, were successfully recovered. A total of 741 species represented by specimens with sequences ≥ 500bp and an additional ten species represented by specimens with shorter sequences were used to produce 53 NJ trees. Intraspecific barcode divergence averaged only 0.54% whereas distance to the Nearest-Neighbour species averaged 5.58%. Of these, 710 species possessed unique DNA barcodes, but 31 species could not be reliably discriminated because of barcode sharing or partial barcode overlap. Species discrimination based on the Barcode Index System (BIN) was successful for 668 out of 723 species which clustered from minimum one to maximum 22 unique BINs. Fifty-five species shared a BIN with up to four species and identification from DNA barcode data is uncertain. Finally, 65 clusters with a unique BIN remained unidentified to species level. These putative taxa, as well as 114 nominal species with more than one BIN, suggest the presence of considerable cryptic diversity, cases which should be examined in future revisionary studies. Pensoft Publishers 2020-03-24 /pmc/articles/PMC7109146/ /pubmed/32256152 http://dx.doi.org/10.3897/zookeys.921.49199 Text en https://creativecommons.org/publicdomain/zero/1.0/This is an open access article distributed under the terms of the CC0 Public Domain Dedication.
spellingShingle Research Article
Huemer, Peter
Karsholt, Ole
Aarvik, Leif
Berggren, Kai
Bidzilya, Oleksiy
Junnilainen, Jari
Landry, Jean-François
Mutanen, Marko
Nupponen, Kari
Segerer, Andreas
Šumpich, Jan
Wieser, Christian
Wiesmair, Benjamin
Hebert, Paul D.N.
DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity
title DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity
title_full DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity
title_fullStr DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity
title_full_unstemmed DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity
title_short DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity
title_sort dna barcode library for european gelechiidae (lepidoptera) suggests greatly underestimated species diversity
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7109146/
https://www.ncbi.nlm.nih.gov/pubmed/32256152
http://dx.doi.org/10.3897/zookeys.921.49199
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