Multiple sequence alignment of the M protein in SARS-associated and other known coronaviruses

In this paper, we report a multiple sequence alignment result on the basis of 10 amino acid sequences of the M protein, which come from different coronaviruses (4 SARS-associated and 6 others known). The alignment model was based on the profile HMM (Hidden Markov Model), and the model training was i...

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Detalles Bibliográficos
Autores principales: Shi, Ding-Hua, Zhou, Hui-Jie, Wang, Bin-Bin, Gu, Yan-Hong, Wang, Yi-Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Shanghai University Press 2003
Materias:
Letters
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111541/
https://www.ncbi.nlm.nih.gov/pubmed/32288423
http://dx.doi.org/10.1007/s11741-003-0078-8
Descripción
Sumario:In this paper, we report a multiple sequence alignment result on the basis of 10 amino acid sequences of the M protein, which come from different coronaviruses (4 SARS-associated and 6 others known). The alignment model was based on the profile HMM (Hidden Markov Model), and the model training was implemented through the SAHMM (Self-Adapting Hidden Markov Model) software developed by the authors.

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