Multiple sequence alignment of the M protein in SARS-associated and other known coronaviruses

In this paper, we report a multiple sequence alignment result on the basis of 10 amino acid sequences of the M protein, which come from different coronaviruses (4 SARS-associated and 6 others known). The alignment model was based on the profile HMM (Hidden Markov Model), and the model training was i...

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Autores principales: Shi, Ding-Hua, Zhou, Hui-Jie, Wang, Bin-Bin, Gu, Yan-Hong, Wang, Yi-Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Shanghai University Press 2003
Materias:
Letters
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111541/
https://www.ncbi.nlm.nih.gov/pubmed/32288423
http://dx.doi.org/10.1007/s11741-003-0078-8
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author Shi, Ding-Hua
Zhou, Hui-Jie
Wang, Bin-Bin
Gu, Yan-Hong
Wang, Yi-Fei
author_facet Shi, Ding-Hua
Zhou, Hui-Jie
Wang, Bin-Bin
Gu, Yan-Hong
Wang, Yi-Fei
author_sort Shi, Ding-Hua
collection PubMed
description In this paper, we report a multiple sequence alignment result on the basis of 10 amino acid sequences of the M protein, which come from different coronaviruses (4 SARS-associated and 6 others known). The alignment model was based on the profile HMM (Hidden Markov Model), and the model training was implemented through the SAHMM (Self-Adapting Hidden Markov Model) software developed by the authors.
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spelling pubmed-71115412020-04-02 Multiple sequence alignment of the M protein in SARS-associated and other known coronaviruses Shi, Ding-Hua Zhou, Hui-Jie Wang, Bin-Bin Gu, Yan-Hong Wang, Yi-Fei J Shanghai Univ Letters In this paper, we report a multiple sequence alignment result on the basis of 10 amino acid sequences of the M protein, which come from different coronaviruses (4 SARS-associated and 6 others known). The alignment model was based on the profile HMM (Hidden Markov Model), and the model training was implemented through the SAHMM (Self-Adapting Hidden Markov Model) software developed by the authors. Shanghai University Press 2003 /pmc/articles/PMC7111541/ /pubmed/32288423 http://dx.doi.org/10.1007/s11741-003-0078-8 Text en © Shanghai University 2003 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Letters
Shi, Ding-Hua
Zhou, Hui-Jie
Wang, Bin-Bin
Gu, Yan-Hong
Wang, Yi-Fei
Multiple sequence alignment of the M protein in SARS-associated and other known coronaviruses
title Multiple sequence alignment of the M protein in SARS-associated and other known coronaviruses
title_full Multiple sequence alignment of the M protein in SARS-associated and other known coronaviruses
title_fullStr Multiple sequence alignment of the M protein in SARS-associated and other known coronaviruses
title_full_unstemmed Multiple sequence alignment of the M protein in SARS-associated and other known coronaviruses
title_short Multiple sequence alignment of the M protein in SARS-associated and other known coronaviruses
title_sort multiple sequence alignment of the m protein in sars-associated and other known coronaviruses
topic Letters
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111541/
https://www.ncbi.nlm.nih.gov/pubmed/32288423
http://dx.doi.org/10.1007/s11741-003-0078-8
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