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Loop-mediated isothermal amplification establishment for detection of pseudorabies virus

A rapid, convenient and reliable pseudorabies virus (PRV) detection system was developed by using the loop-mediated isothermal amplification (LAMP) method. Six special primers were designed successfully based on the PRV DNA-binding protein (DBP) gene. The assay was optimized to amplify PRV DNA by in...

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Detalles Bibliográficos
Autores principales: En, Fang-Xue, Wei, Xiong, Jian, Li, Qin, Chen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7112783/
https://www.ncbi.nlm.nih.gov/pubmed/18468699
http://dx.doi.org/10.1016/j.jviromet.2008.03.028
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author En, Fang-Xue
Wei, Xiong
Jian, Li
Qin, Chen
author_facet En, Fang-Xue
Wei, Xiong
Jian, Li
Qin, Chen
author_sort En, Fang-Xue
collection PubMed
description A rapid, convenient and reliable pseudorabies virus (PRV) detection system was developed by using the loop-mediated isothermal amplification (LAMP) method. Six special primers were designed successfully based on the PRV DNA-binding protein (DBP) gene. The assay was optimized to amplify PRV DNA by incubation at 63 °C for 1 h. The LAMP products had a ladder-like pattern of bands from 188 bp when electrophoresed on an agarose gel and its specificity was confirmed by digestion with Hinc II enzyme. Two naked-eye detection methods were developed for use in the field. The detection limit of the LAMP assay was found to be 10 fg DNA sample which was 100–1000-fold higher than that of PCR. By using DNA (or cDNA) samples extracted from three different PRV strains and six other viruses known to be related genetically to PRV or to cause similar clinical signals in pig, the system was identified to amplify only the PRV DNA. A comparison between the LAMP and PCR assay using five clinical samples showed good correlation.
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spelling pubmed-71127832020-04-02 Loop-mediated isothermal amplification establishment for detection of pseudorabies virus En, Fang-Xue Wei, Xiong Jian, Li Qin, Chen J Virol Methods Article A rapid, convenient and reliable pseudorabies virus (PRV) detection system was developed by using the loop-mediated isothermal amplification (LAMP) method. Six special primers were designed successfully based on the PRV DNA-binding protein (DBP) gene. The assay was optimized to amplify PRV DNA by incubation at 63 °C for 1 h. The LAMP products had a ladder-like pattern of bands from 188 bp when electrophoresed on an agarose gel and its specificity was confirmed by digestion with Hinc II enzyme. Two naked-eye detection methods were developed for use in the field. The detection limit of the LAMP assay was found to be 10 fg DNA sample which was 100–1000-fold higher than that of PCR. By using DNA (or cDNA) samples extracted from three different PRV strains and six other viruses known to be related genetically to PRV or to cause similar clinical signals in pig, the system was identified to amplify only the PRV DNA. A comparison between the LAMP and PCR assay using five clinical samples showed good correlation. Elsevier B.V. 2008-07 2008-05-12 /pmc/articles/PMC7112783/ /pubmed/18468699 http://dx.doi.org/10.1016/j.jviromet.2008.03.028 Text en Copyright © 2008 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
En, Fang-Xue
Wei, Xiong
Jian, Li
Qin, Chen
Loop-mediated isothermal amplification establishment for detection of pseudorabies virus
title Loop-mediated isothermal amplification establishment for detection of pseudorabies virus
title_full Loop-mediated isothermal amplification establishment for detection of pseudorabies virus
title_fullStr Loop-mediated isothermal amplification establishment for detection of pseudorabies virus
title_full_unstemmed Loop-mediated isothermal amplification establishment for detection of pseudorabies virus
title_short Loop-mediated isothermal amplification establishment for detection of pseudorabies virus
title_sort loop-mediated isothermal amplification establishment for detection of pseudorabies virus
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7112783/
https://www.ncbi.nlm.nih.gov/pubmed/18468699
http://dx.doi.org/10.1016/j.jviromet.2008.03.028
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