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So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation
[Image: see text] Glycomic-based approaches to discover potential biomarkers have shown great promise in their ability to distinguish between healthy and diseased individuals; these methods can identify when aberrant glycosylation is significant, but they cannot practically be adapted into widely im...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7114137/ https://www.ncbi.nlm.nih.gov/pubmed/32258861 http://dx.doi.org/10.1021/acsomega.9b03334 |
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author | Shipman, Joshua T. Nguyen, Hanna T. Desaire, Heather |
author_facet | Shipman, Joshua T. Nguyen, Hanna T. Desaire, Heather |
author_sort | Shipman, Joshua T. |
collection | PubMed |
description | [Image: see text] Glycomic-based approaches to discover potential biomarkers have shown great promise in their ability to distinguish between healthy and diseased individuals; these methods can identify when aberrant glycosylation is significant, but they cannot practically be adapted into widely implemented diagnostic assays because they are too complex, expensive, and low-throughput. We have developed a new strategy that addresses challenges associated with sample preparation, sample throughput, instrumentation needs, and data analysis to transfer the valuable knowledge provided by protein glycosylation into a clinical environment. Notably, the detection limits of the assay are in the single-digit picomole range. Proof of principle is demonstrated by quantifying the changes in the sialic acid content in fetuin. As the sialic acid content in proteins varies in a number of disease states, this example demonstrates the utility of the method for biomarker analysis. Furthermore, the developed method can be adapted to other biologically important saccharides, affording a broad array of quantitative glycomic analyses that are accessible in a high-throughput, plate-reader format. These studies enable glycomic-based biomarker discovery efforts to transition through the difficult landscape of developing a potential biomarker into a clinical assay. |
format | Online Article Text |
id | pubmed-7114137 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-71141372020-04-03 So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation Shipman, Joshua T. Nguyen, Hanna T. Desaire, Heather ACS Omega [Image: see text] Glycomic-based approaches to discover potential biomarkers have shown great promise in their ability to distinguish between healthy and diseased individuals; these methods can identify when aberrant glycosylation is significant, but they cannot practically be adapted into widely implemented diagnostic assays because they are too complex, expensive, and low-throughput. We have developed a new strategy that addresses challenges associated with sample preparation, sample throughput, instrumentation needs, and data analysis to transfer the valuable knowledge provided by protein glycosylation into a clinical environment. Notably, the detection limits of the assay are in the single-digit picomole range. Proof of principle is demonstrated by quantifying the changes in the sialic acid content in fetuin. As the sialic acid content in proteins varies in a number of disease states, this example demonstrates the utility of the method for biomarker analysis. Furthermore, the developed method can be adapted to other biologically important saccharides, affording a broad array of quantitative glycomic analyses that are accessible in a high-throughput, plate-reader format. These studies enable glycomic-based biomarker discovery efforts to transition through the difficult landscape of developing a potential biomarker into a clinical assay. American Chemical Society 2020-03-18 /pmc/articles/PMC7114137/ /pubmed/32258861 http://dx.doi.org/10.1021/acsomega.9b03334 Text en Copyright © 2020 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Shipman, Joshua T. Nguyen, Hanna T. Desaire, Heather So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation |
title | So You Discovered a Potential Glycan-Based Biomarker;
Now What? We Developed a High-Throughput Method for Quantitative Clinical
Glycan Biomarker Validation |
title_full | So You Discovered a Potential Glycan-Based Biomarker;
Now What? We Developed a High-Throughput Method for Quantitative Clinical
Glycan Biomarker Validation |
title_fullStr | So You Discovered a Potential Glycan-Based Biomarker;
Now What? We Developed a High-Throughput Method for Quantitative Clinical
Glycan Biomarker Validation |
title_full_unstemmed | So You Discovered a Potential Glycan-Based Biomarker;
Now What? We Developed a High-Throughput Method for Quantitative Clinical
Glycan Biomarker Validation |
title_short | So You Discovered a Potential Glycan-Based Biomarker;
Now What? We Developed a High-Throughput Method for Quantitative Clinical
Glycan Biomarker Validation |
title_sort | so you discovered a potential glycan-based biomarker;
now what? we developed a high-throughput method for quantitative clinical
glycan biomarker validation |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7114137/ https://www.ncbi.nlm.nih.gov/pubmed/32258861 http://dx.doi.org/10.1021/acsomega.9b03334 |
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