Cargando…

So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation

[Image: see text] Glycomic-based approaches to discover potential biomarkers have shown great promise in their ability to distinguish between healthy and diseased individuals; these methods can identify when aberrant glycosylation is significant, but they cannot practically be adapted into widely im...

Descripción completa

Detalles Bibliográficos
Autores principales: Shipman, Joshua T., Nguyen, Hanna T., Desaire, Heather
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7114137/
https://www.ncbi.nlm.nih.gov/pubmed/32258861
http://dx.doi.org/10.1021/acsomega.9b03334
_version_ 1783513821224108032
author Shipman, Joshua T.
Nguyen, Hanna T.
Desaire, Heather
author_facet Shipman, Joshua T.
Nguyen, Hanna T.
Desaire, Heather
author_sort Shipman, Joshua T.
collection PubMed
description [Image: see text] Glycomic-based approaches to discover potential biomarkers have shown great promise in their ability to distinguish between healthy and diseased individuals; these methods can identify when aberrant glycosylation is significant, but they cannot practically be adapted into widely implemented diagnostic assays because they are too complex, expensive, and low-throughput. We have developed a new strategy that addresses challenges associated with sample preparation, sample throughput, instrumentation needs, and data analysis to transfer the valuable knowledge provided by protein glycosylation into a clinical environment. Notably, the detection limits of the assay are in the single-digit picomole range. Proof of principle is demonstrated by quantifying the changes in the sialic acid content in fetuin. As the sialic acid content in proteins varies in a number of disease states, this example demonstrates the utility of the method for biomarker analysis. Furthermore, the developed method can be adapted to other biologically important saccharides, affording a broad array of quantitative glycomic analyses that are accessible in a high-throughput, plate-reader format. These studies enable glycomic-based biomarker discovery efforts to transition through the difficult landscape of developing a potential biomarker into a clinical assay.
format Online
Article
Text
id pubmed-7114137
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-71141372020-04-03 So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation Shipman, Joshua T. Nguyen, Hanna T. Desaire, Heather ACS Omega [Image: see text] Glycomic-based approaches to discover potential biomarkers have shown great promise in their ability to distinguish between healthy and diseased individuals; these methods can identify when aberrant glycosylation is significant, but they cannot practically be adapted into widely implemented diagnostic assays because they are too complex, expensive, and low-throughput. We have developed a new strategy that addresses challenges associated with sample preparation, sample throughput, instrumentation needs, and data analysis to transfer the valuable knowledge provided by protein glycosylation into a clinical environment. Notably, the detection limits of the assay are in the single-digit picomole range. Proof of principle is demonstrated by quantifying the changes in the sialic acid content in fetuin. As the sialic acid content in proteins varies in a number of disease states, this example demonstrates the utility of the method for biomarker analysis. Furthermore, the developed method can be adapted to other biologically important saccharides, affording a broad array of quantitative glycomic analyses that are accessible in a high-throughput, plate-reader format. These studies enable glycomic-based biomarker discovery efforts to transition through the difficult landscape of developing a potential biomarker into a clinical assay. American Chemical Society 2020-03-18 /pmc/articles/PMC7114137/ /pubmed/32258861 http://dx.doi.org/10.1021/acsomega.9b03334 Text en Copyright © 2020 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Shipman, Joshua T.
Nguyen, Hanna T.
Desaire, Heather
So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation
title So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation
title_full So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation
title_fullStr So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation
title_full_unstemmed So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation
title_short So You Discovered a Potential Glycan-Based Biomarker; Now What? We Developed a High-Throughput Method for Quantitative Clinical Glycan Biomarker Validation
title_sort so you discovered a potential glycan-based biomarker; now what? we developed a high-throughput method for quantitative clinical glycan biomarker validation
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7114137/
https://www.ncbi.nlm.nih.gov/pubmed/32258861
http://dx.doi.org/10.1021/acsomega.9b03334
work_keys_str_mv AT shipmanjoshuat soyoudiscoveredapotentialglycanbasedbiomarkernowwhatwedevelopedahighthroughputmethodforquantitativeclinicalglycanbiomarkervalidation
AT nguyenhannat soyoudiscoveredapotentialglycanbasedbiomarkernowwhatwedevelopedahighthroughputmethodforquantitativeclinicalglycanbiomarkervalidation
AT desaireheather soyoudiscoveredapotentialglycanbasedbiomarkernowwhatwedevelopedahighthroughputmethodforquantitativeclinicalglycanbiomarkervalidation