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Adaptive multiresolution method for MAP reconstruction in electron tomography

3D image reconstruction with electron tomography holds problems due to the severely limited range of projection angles and low signal to noise ratio of the acquired projection images. The maximum a posteriori (MAP) reconstruction methods have been successful in compensating for the missing informati...

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Detalles Bibliográficos
Autores principales: Acar, Erman, Peltonen, Sari, Ruotsalainen, Ulla
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7115799/
https://www.ncbi.nlm.nih.gov/pubmed/27522477
http://dx.doi.org/10.1016/j.ultramic.2016.08.002
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author Acar, Erman
Peltonen, Sari
Ruotsalainen, Ulla
author_facet Acar, Erman
Peltonen, Sari
Ruotsalainen, Ulla
author_sort Acar, Erman
collection PubMed
description 3D image reconstruction with electron tomography holds problems due to the severely limited range of projection angles and low signal to noise ratio of the acquired projection images. The maximum a posteriori (MAP) reconstruction methods have been successful in compensating for the missing information and suppressing noise with their intrinsic regularization techniques. There are two major problems in MAP reconstruction methods: (1) selection of the regularization parameter that controls the balance between the data fidelity and the prior information, and (2) long computation time. One aim of this study is to provide an adaptive solution to the regularization parameter selection problem without having additional knowledge about the imaging environment and the sample. The other aim is to realize the reconstruction using sequences of resolution levels to shorten the computation time. The reconstructions were analyzed in terms of accuracy and computational efficiency using a simulated biological phantom and publically available experimental datasets of electron tomography. The numerical and visual evaluations of the experiments show that the adaptive multiresolution method can provide more accurate results than the weighted back projection (WBP), simultaneous iterative reconstruction technique (SIRT), and sequential MAP expectation maximization (sMAPEM) method. The method is superior to sMAPEM also in terms of computation time and usability since it can reconstruct 3D images significantly faster without requiring any parameter to be set by the user.
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spelling pubmed-71157992020-04-02 Adaptive multiresolution method for MAP reconstruction in electron tomography Acar, Erman Peltonen, Sari Ruotsalainen, Ulla Ultramicroscopy Article 3D image reconstruction with electron tomography holds problems due to the severely limited range of projection angles and low signal to noise ratio of the acquired projection images. The maximum a posteriori (MAP) reconstruction methods have been successful in compensating for the missing information and suppressing noise with their intrinsic regularization techniques. There are two major problems in MAP reconstruction methods: (1) selection of the regularization parameter that controls the balance between the data fidelity and the prior information, and (2) long computation time. One aim of this study is to provide an adaptive solution to the regularization parameter selection problem without having additional knowledge about the imaging environment and the sample. The other aim is to realize the reconstruction using sequences of resolution levels to shorten the computation time. The reconstructions were analyzed in terms of accuracy and computational efficiency using a simulated biological phantom and publically available experimental datasets of electron tomography. The numerical and visual evaluations of the experiments show that the adaptive multiresolution method can provide more accurate results than the weighted back projection (WBP), simultaneous iterative reconstruction technique (SIRT), and sequential MAP expectation maximization (sMAPEM) method. The method is superior to sMAPEM also in terms of computation time and usability since it can reconstruct 3D images significantly faster without requiring any parameter to be set by the user. Elsevier B.V. 2016-11 2016-08-06 /pmc/articles/PMC7115799/ /pubmed/27522477 http://dx.doi.org/10.1016/j.ultramic.2016.08.002 Text en © 2016 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Acar, Erman
Peltonen, Sari
Ruotsalainen, Ulla
Adaptive multiresolution method for MAP reconstruction in electron tomography
title Adaptive multiresolution method for MAP reconstruction in electron tomography
title_full Adaptive multiresolution method for MAP reconstruction in electron tomography
title_fullStr Adaptive multiresolution method for MAP reconstruction in electron tomography
title_full_unstemmed Adaptive multiresolution method for MAP reconstruction in electron tomography
title_short Adaptive multiresolution method for MAP reconstruction in electron tomography
title_sort adaptive multiresolution method for map reconstruction in electron tomography
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7115799/
https://www.ncbi.nlm.nih.gov/pubmed/27522477
http://dx.doi.org/10.1016/j.ultramic.2016.08.002
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