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An efficient and novel technology for the extraction of parasite genomic DNA from whole blood or culture
The aim of this study was to assess pathogen DNA extraction with a new spin column-based method (DNA-XT). DNA from either whole-blood samples spiked with Plasmodium falciparum or Leishmania donovani amastigote culture was extracted with DNA-XT and compared with that produced by a commercial extracti...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Future Science Ltd
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7115988/ https://www.ncbi.nlm.nih.gov/pubmed/31774301 http://dx.doi.org/10.2144/btn-2019-0086 |
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author | Clark, David J Moore, Catherine M Flanagan, Marc Bocxlaer, Katrien Van Piperaki, Evangelia-Theophano Yardley, Vanessa Croft, Simon L Tyson, John Whitehouse, Sam P O’Halloran, Jonathan Krishna, Sanjeev Staines, Henry M |
author_facet | Clark, David J Moore, Catherine M Flanagan, Marc Bocxlaer, Katrien Van Piperaki, Evangelia-Theophano Yardley, Vanessa Croft, Simon L Tyson, John Whitehouse, Sam P O’Halloran, Jonathan Krishna, Sanjeev Staines, Henry M |
author_sort | Clark, David J |
collection | PubMed |
description | The aim of this study was to assess pathogen DNA extraction with a new spin column-based method (DNA-XT). DNA from either whole-blood samples spiked with Plasmodium falciparum or Leishmania donovani amastigote culture was extracted with DNA-XT and compared with that produced by a commercial extraction kit (DNeasy(®)). Eluates from large and small sample volumes were assessed by PCR and spectroscopy. Using a small volume (5 μl) of blood, the DNA-XT and DNeasy methods produced eluates with similar DNA concentrations (0.63 vs 1.06 ng/μl, respectively). The DNA-XT method produced DNA with lower PCR inhibition than DNeasy. The new technique was also twice as fast and required fewer plastics and manipulations but had reduced total recovered DNA compared with DNeasy. |
format | Online Article Text |
id | pubmed-7115988 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Future Science Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-71159882020-08-27 An efficient and novel technology for the extraction of parasite genomic DNA from whole blood or culture Clark, David J Moore, Catherine M Flanagan, Marc Bocxlaer, Katrien Van Piperaki, Evangelia-Theophano Yardley, Vanessa Croft, Simon L Tyson, John Whitehouse, Sam P O’Halloran, Jonathan Krishna, Sanjeev Staines, Henry M Biotechniques Reports The aim of this study was to assess pathogen DNA extraction with a new spin column-based method (DNA-XT). DNA from either whole-blood samples spiked with Plasmodium falciparum or Leishmania donovani amastigote culture was extracted with DNA-XT and compared with that produced by a commercial extraction kit (DNeasy(®)). Eluates from large and small sample volumes were assessed by PCR and spectroscopy. Using a small volume (5 μl) of blood, the DNA-XT and DNeasy methods produced eluates with similar DNA concentrations (0.63 vs 1.06 ng/μl, respectively). The DNA-XT method produced DNA with lower PCR inhibition than DNeasy. The new technique was also twice as fast and required fewer plastics and manipulations but had reduced total recovered DNA compared with DNeasy. Future Science Ltd 2019-11-27 2019-11 /pmc/articles/PMC7115988/ /pubmed/31774301 http://dx.doi.org/10.2144/btn-2019-0086 Text en © 2019 Dr Henry Staines This work is licensed under the Attribution-NonCommercial-NoDerivatives 4.0 Unported License (http://creativecommons.org/licenses/by-nc-nd/4.0/) |
spellingShingle | Reports Clark, David J Moore, Catherine M Flanagan, Marc Bocxlaer, Katrien Van Piperaki, Evangelia-Theophano Yardley, Vanessa Croft, Simon L Tyson, John Whitehouse, Sam P O’Halloran, Jonathan Krishna, Sanjeev Staines, Henry M An efficient and novel technology for the extraction of parasite genomic DNA from whole blood or culture |
title | An efficient and novel technology for the extraction of parasite genomic DNA from whole blood or culture |
title_full | An efficient and novel technology for the extraction of parasite genomic DNA from whole blood or culture |
title_fullStr | An efficient and novel technology for the extraction of parasite genomic DNA from whole blood or culture |
title_full_unstemmed | An efficient and novel technology for the extraction of parasite genomic DNA from whole blood or culture |
title_short | An efficient and novel technology for the extraction of parasite genomic DNA from whole blood or culture |
title_sort | efficient and novel technology for the extraction of parasite genomic dna from whole blood or culture |
topic | Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7115988/ https://www.ncbi.nlm.nih.gov/pubmed/31774301 http://dx.doi.org/10.2144/btn-2019-0086 |
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