Identification of coronaviruses in dogs that segregate separately from the canine coronavirus genotype

The genetic diversity of 16 canine coronavirus (CCoV) samples is described. Samples were obtained from pups infected naturally living in different areas. Sequence data were obtained from the M gene and pol1a and pol1b regions. The phylogenetic relationships among these sequences and sequences publis...

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Autores principales: Pratelli, Annamaria, Martella, Vito, Pistello, Mauro, Elia, Gabriella, Decaro, Nicola, Buonavoglia, Domenico, Camero, Michele, Tempesta, Maria, Buonavoglia, Canio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Science B.V. 2003
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7119488/
https://www.ncbi.nlm.nih.gov/pubmed/12505636
http://dx.doi.org/10.1016/S0166-0934(02)00246-X
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author Pratelli, Annamaria
Martella, Vito
Pistello, Mauro
Elia, Gabriella
Decaro, Nicola
Buonavoglia, Domenico
Camero, Michele
Tempesta, Maria
Buonavoglia, Canio
author_facet Pratelli, Annamaria
Martella, Vito
Pistello, Mauro
Elia, Gabriella
Decaro, Nicola
Buonavoglia, Domenico
Camero, Michele
Tempesta, Maria
Buonavoglia, Canio
author_sort Pratelli, Annamaria
collection PubMed
description The genetic diversity of 16 canine coronavirus (CCoV) samples is described. Samples were obtained from pups infected naturally living in different areas. Sequence data were obtained from the M gene and pol1a and pol1b regions. The phylogenetic relationships among these sequences and sequences published previously were determined. The canine samples segregated in two separate clusters. Samples of the first cluster were intermingled with reference strains of CCoV genotype and therefore could be assigned to this genotype. The second cluster segregated separately from CCoV and feline coronavirus genotypes and therefore these samples may represent genetic outliers. The reliability of the classification results was confirmed by repeating the phylogenetic analysis with nucleotide and amino acid sequences from multiple genomic regions.
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spelling pubmed-71194882020-04-08 Identification of coronaviruses in dogs that segregate separately from the canine coronavirus genotype Pratelli, Annamaria Martella, Vito Pistello, Mauro Elia, Gabriella Decaro, Nicola Buonavoglia, Domenico Camero, Michele Tempesta, Maria Buonavoglia, Canio J Virol Methods Article The genetic diversity of 16 canine coronavirus (CCoV) samples is described. Samples were obtained from pups infected naturally living in different areas. Sequence data were obtained from the M gene and pol1a and pol1b regions. The phylogenetic relationships among these sequences and sequences published previously were determined. The canine samples segregated in two separate clusters. Samples of the first cluster were intermingled with reference strains of CCoV genotype and therefore could be assigned to this genotype. The second cluster segregated separately from CCoV and feline coronavirus genotypes and therefore these samples may represent genetic outliers. The reliability of the classification results was confirmed by repeating the phylogenetic analysis with nucleotide and amino acid sequences from multiple genomic regions. Elsevier Science B.V. 2003-02 2002-12-11 /pmc/articles/PMC7119488/ /pubmed/12505636 http://dx.doi.org/10.1016/S0166-0934(02)00246-X Text en Copyright © 2002 Elsevier Science B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Pratelli, Annamaria
Martella, Vito
Pistello, Mauro
Elia, Gabriella
Decaro, Nicola
Buonavoglia, Domenico
Camero, Michele
Tempesta, Maria
Buonavoglia, Canio
Identification of coronaviruses in dogs that segregate separately from the canine coronavirus genotype
title Identification of coronaviruses in dogs that segregate separately from the canine coronavirus genotype
title_full Identification of coronaviruses in dogs that segregate separately from the canine coronavirus genotype
title_fullStr Identification of coronaviruses in dogs that segregate separately from the canine coronavirus genotype
title_full_unstemmed Identification of coronaviruses in dogs that segregate separately from the canine coronavirus genotype
title_short Identification of coronaviruses in dogs that segregate separately from the canine coronavirus genotype
title_sort identification of coronaviruses in dogs that segregate separately from the canine coronavirus genotype
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7119488/
https://www.ncbi.nlm.nih.gov/pubmed/12505636
http://dx.doi.org/10.1016/S0166-0934(02)00246-X
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