Genetic Analysis

Genetic analysis of sequence data is central to determining the evolutionary history and molecular epidemiology of viruses, particularly those such as influenza A virus that have complex ecosystems involving multiple hosts. Here we provide an outline of routine phylogenetic analyses of influenza A v...

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Detalles Bibliográficos
Autores principales: Smith, Gavin J. D., Bahl, Justin, Vijaykrishna, Dhanasekaran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2012
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7121150/
https://www.ncbi.nlm.nih.gov/pubmed/22528162
http://dx.doi.org/10.1007/978-1-61779-621-0_13
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author Smith, Gavin J. D.
Bahl, Justin
Vijaykrishna, Dhanasekaran
author_facet Smith, Gavin J. D.
Bahl, Justin
Vijaykrishna, Dhanasekaran
author_sort Smith, Gavin J. D.
collection PubMed
description Genetic analysis of sequence data is central to determining the evolutionary history and molecular epidemiology of viruses, particularly those such as influenza A virus that have complex ecosystems involving multiple hosts. Here we provide an outline of routine phylogenetic analyses of influenza A viruses including multiple sequence alignment, selecting the best-fit evolutionary model and phylogenetic tree reconstruction using Neighbor joining, Maximum likelihood, and Bayesian inference.
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spelling pubmed-71211502020-04-06 Genetic Analysis Smith, Gavin J. D. Bahl, Justin Vijaykrishna, Dhanasekaran Influenza Virus Article Genetic analysis of sequence data is central to determining the evolutionary history and molecular epidemiology of viruses, particularly those such as influenza A virus that have complex ecosystems involving multiple hosts. Here we provide an outline of routine phylogenetic analyses of influenza A viruses including multiple sequence alignment, selecting the best-fit evolutionary model and phylogenetic tree reconstruction using Neighbor joining, Maximum likelihood, and Bayesian inference. 2012-02-18 /pmc/articles/PMC7121150/ /pubmed/22528162 http://dx.doi.org/10.1007/978-1-61779-621-0_13 Text en © Springer Science+Business Media, LLC 2012 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Smith, Gavin J. D.
Bahl, Justin
Vijaykrishna, Dhanasekaran
Genetic Analysis
title Genetic Analysis
title_full Genetic Analysis
title_fullStr Genetic Analysis
title_full_unstemmed Genetic Analysis
title_short Genetic Analysis
title_sort genetic analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7121150/
https://www.ncbi.nlm.nih.gov/pubmed/22528162
http://dx.doi.org/10.1007/978-1-61779-621-0_13
work_keys_str_mv AT smithgavinjd geneticanalysis
AT bahljustin geneticanalysis
AT vijaykrishnadhanasekaran geneticanalysis

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