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The Litsea genome and the evolution of the laurel family

The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other...

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Autores principales: Chen, Yi-Cun, Li, Zhen, Zhao, Yun-Xiao, Gao, Ming, Wang, Jie-Yu, Liu, Ke-Wei, Wang, Xue, Wu, Li-Wen, Jiao, Yu-Lian, Xu, Zi-Long, He, Wen-Guang, Zhang, Qi-Yan, Liang, Chieh-Kai, Hsiao, Yu-Yun, Zhang, Di-Yang, Lan, Si-Ren, Huang, Laiqiang, Xu, Wei, Tsai, Wen-Chieh, Liu, Zhong-Jian, Van de Peer, Yves, Wang, Yang-Dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7125107/
https://www.ncbi.nlm.nih.gov/pubmed/32245969
http://dx.doi.org/10.1038/s41467-020-15493-5
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author Chen, Yi-Cun
Li, Zhen
Zhao, Yun-Xiao
Gao, Ming
Wang, Jie-Yu
Liu, Ke-Wei
Wang, Xue
Wu, Li-Wen
Jiao, Yu-Lian
Xu, Zi-Long
He, Wen-Guang
Zhang, Qi-Yan
Liang, Chieh-Kai
Hsiao, Yu-Yun
Zhang, Di-Yang
Lan, Si-Ren
Huang, Laiqiang
Xu, Wei
Tsai, Wen-Chieh
Liu, Zhong-Jian
Van de Peer, Yves
Wang, Yang-Dong
author_facet Chen, Yi-Cun
Li, Zhen
Zhao, Yun-Xiao
Gao, Ming
Wang, Jie-Yu
Liu, Ke-Wei
Wang, Xue
Wu, Li-Wen
Jiao, Yu-Lian
Xu, Zi-Long
He, Wen-Guang
Zhang, Qi-Yan
Liang, Chieh-Kai
Hsiao, Yu-Yun
Zhang, Di-Yang
Lan, Si-Ren
Huang, Laiqiang
Xu, Wei
Tsai, Wen-Chieh
Liu, Zhong-Jian
Van de Peer, Yves
Wang, Yang-Dong
author_sort Chen, Yi-Cun
collection PubMed
description The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents.
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spelling pubmed-71251072020-04-06 The Litsea genome and the evolution of the laurel family Chen, Yi-Cun Li, Zhen Zhao, Yun-Xiao Gao, Ming Wang, Jie-Yu Liu, Ke-Wei Wang, Xue Wu, Li-Wen Jiao, Yu-Lian Xu, Zi-Long He, Wen-Guang Zhang, Qi-Yan Liang, Chieh-Kai Hsiao, Yu-Yun Zhang, Di-Yang Lan, Si-Ren Huang, Laiqiang Xu, Wei Tsai, Wen-Chieh Liu, Zhong-Jian Van de Peer, Yves Wang, Yang-Dong Nat Commun Article The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents. Nature Publishing Group UK 2020-04-03 /pmc/articles/PMC7125107/ /pubmed/32245969 http://dx.doi.org/10.1038/s41467-020-15493-5 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Chen, Yi-Cun
Li, Zhen
Zhao, Yun-Xiao
Gao, Ming
Wang, Jie-Yu
Liu, Ke-Wei
Wang, Xue
Wu, Li-Wen
Jiao, Yu-Lian
Xu, Zi-Long
He, Wen-Guang
Zhang, Qi-Yan
Liang, Chieh-Kai
Hsiao, Yu-Yun
Zhang, Di-Yang
Lan, Si-Ren
Huang, Laiqiang
Xu, Wei
Tsai, Wen-Chieh
Liu, Zhong-Jian
Van de Peer, Yves
Wang, Yang-Dong
The Litsea genome and the evolution of the laurel family
title The Litsea genome and the evolution of the laurel family
title_full The Litsea genome and the evolution of the laurel family
title_fullStr The Litsea genome and the evolution of the laurel family
title_full_unstemmed The Litsea genome and the evolution of the laurel family
title_short The Litsea genome and the evolution of the laurel family
title_sort litsea genome and the evolution of the laurel family
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7125107/
https://www.ncbi.nlm.nih.gov/pubmed/32245969
http://dx.doi.org/10.1038/s41467-020-15493-5
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