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The Litsea genome and the evolution of the laurel family
The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7125107/ https://www.ncbi.nlm.nih.gov/pubmed/32245969 http://dx.doi.org/10.1038/s41467-020-15493-5 |
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author | Chen, Yi-Cun Li, Zhen Zhao, Yun-Xiao Gao, Ming Wang, Jie-Yu Liu, Ke-Wei Wang, Xue Wu, Li-Wen Jiao, Yu-Lian Xu, Zi-Long He, Wen-Guang Zhang, Qi-Yan Liang, Chieh-Kai Hsiao, Yu-Yun Zhang, Di-Yang Lan, Si-Ren Huang, Laiqiang Xu, Wei Tsai, Wen-Chieh Liu, Zhong-Jian Van de Peer, Yves Wang, Yang-Dong |
author_facet | Chen, Yi-Cun Li, Zhen Zhao, Yun-Xiao Gao, Ming Wang, Jie-Yu Liu, Ke-Wei Wang, Xue Wu, Li-Wen Jiao, Yu-Lian Xu, Zi-Long He, Wen-Guang Zhang, Qi-Yan Liang, Chieh-Kai Hsiao, Yu-Yun Zhang, Di-Yang Lan, Si-Ren Huang, Laiqiang Xu, Wei Tsai, Wen-Chieh Liu, Zhong-Jian Van de Peer, Yves Wang, Yang-Dong |
author_sort | Chen, Yi-Cun |
collection | PubMed |
description | The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents. |
format | Online Article Text |
id | pubmed-7125107 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-71251072020-04-06 The Litsea genome and the evolution of the laurel family Chen, Yi-Cun Li, Zhen Zhao, Yun-Xiao Gao, Ming Wang, Jie-Yu Liu, Ke-Wei Wang, Xue Wu, Li-Wen Jiao, Yu-Lian Xu, Zi-Long He, Wen-Guang Zhang, Qi-Yan Liang, Chieh-Kai Hsiao, Yu-Yun Zhang, Di-Yang Lan, Si-Ren Huang, Laiqiang Xu, Wei Tsai, Wen-Chieh Liu, Zhong-Jian Van de Peer, Yves Wang, Yang-Dong Nat Commun Article The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents. Nature Publishing Group UK 2020-04-03 /pmc/articles/PMC7125107/ /pubmed/32245969 http://dx.doi.org/10.1038/s41467-020-15493-5 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Chen, Yi-Cun Li, Zhen Zhao, Yun-Xiao Gao, Ming Wang, Jie-Yu Liu, Ke-Wei Wang, Xue Wu, Li-Wen Jiao, Yu-Lian Xu, Zi-Long He, Wen-Guang Zhang, Qi-Yan Liang, Chieh-Kai Hsiao, Yu-Yun Zhang, Di-Yang Lan, Si-Ren Huang, Laiqiang Xu, Wei Tsai, Wen-Chieh Liu, Zhong-Jian Van de Peer, Yves Wang, Yang-Dong The Litsea genome and the evolution of the laurel family |
title | The Litsea genome and the evolution of the laurel family |
title_full | The Litsea genome and the evolution of the laurel family |
title_fullStr | The Litsea genome and the evolution of the laurel family |
title_full_unstemmed | The Litsea genome and the evolution of the laurel family |
title_short | The Litsea genome and the evolution of the laurel family |
title_sort | litsea genome and the evolution of the laurel family |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7125107/ https://www.ncbi.nlm.nih.gov/pubmed/32245969 http://dx.doi.org/10.1038/s41467-020-15493-5 |
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