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Deep Learning Method for Mandibular Canal Segmentation in Dental Cone Beam Computed Tomography Volumes

Accurate localisation of mandibular canals in lower jaws is important in dental implantology, in which the implant position and dimensions are currently determined manually from 3D CT images by medical experts to avoid damaging the mandibular nerve inside the canal. Here we present a deep learning s...

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Autores principales: Jaskari, Joel, Sahlsten, Jaakko, Järnstedt, Jorma, Mehtonen, Helena, Karhu, Kalle, Sundqvist, Osku, Hietanen, Ari, Varjonen, Vesa, Mattila, Vesa, Kaski, Kimmo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7125134/
https://www.ncbi.nlm.nih.gov/pubmed/32245989
http://dx.doi.org/10.1038/s41598-020-62321-3
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author Jaskari, Joel
Sahlsten, Jaakko
Järnstedt, Jorma
Mehtonen, Helena
Karhu, Kalle
Sundqvist, Osku
Hietanen, Ari
Varjonen, Vesa
Mattila, Vesa
Kaski, Kimmo
author_facet Jaskari, Joel
Sahlsten, Jaakko
Järnstedt, Jorma
Mehtonen, Helena
Karhu, Kalle
Sundqvist, Osku
Hietanen, Ari
Varjonen, Vesa
Mattila, Vesa
Kaski, Kimmo
author_sort Jaskari, Joel
collection PubMed
description Accurate localisation of mandibular canals in lower jaws is important in dental implantology, in which the implant position and dimensions are currently determined manually from 3D CT images by medical experts to avoid damaging the mandibular nerve inside the canal. Here we present a deep learning system for automatic localisation of the mandibular canals by applying a fully convolutional neural network segmentation on clinically diverse dataset of 637 cone beam CT volumes, with mandibular canals being coarsely annotated by radiologists, and using a dataset of 15 volumes with accurate voxel-level mandibular canal annotations for model evaluation. We show that our deep learning model, trained on the coarsely annotated volumes, localises mandibular canals of the voxel-level annotated set, highly accurately with the mean curve distance and average symmetric surface distance being 0.56 mm and 0.45 mm, respectively. These unparalleled accurate results highlight that deep learning integrated into dental implantology workflow could significantly reduce manual labour in mandibular canal annotations.
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spelling pubmed-71251342020-04-08 Deep Learning Method for Mandibular Canal Segmentation in Dental Cone Beam Computed Tomography Volumes Jaskari, Joel Sahlsten, Jaakko Järnstedt, Jorma Mehtonen, Helena Karhu, Kalle Sundqvist, Osku Hietanen, Ari Varjonen, Vesa Mattila, Vesa Kaski, Kimmo Sci Rep Article Accurate localisation of mandibular canals in lower jaws is important in dental implantology, in which the implant position and dimensions are currently determined manually from 3D CT images by medical experts to avoid damaging the mandibular nerve inside the canal. Here we present a deep learning system for automatic localisation of the mandibular canals by applying a fully convolutional neural network segmentation on clinically diverse dataset of 637 cone beam CT volumes, with mandibular canals being coarsely annotated by radiologists, and using a dataset of 15 volumes with accurate voxel-level mandibular canal annotations for model evaluation. We show that our deep learning model, trained on the coarsely annotated volumes, localises mandibular canals of the voxel-level annotated set, highly accurately with the mean curve distance and average symmetric surface distance being 0.56 mm and 0.45 mm, respectively. These unparalleled accurate results highlight that deep learning integrated into dental implantology workflow could significantly reduce manual labour in mandibular canal annotations. Nature Publishing Group UK 2020-04-03 /pmc/articles/PMC7125134/ /pubmed/32245989 http://dx.doi.org/10.1038/s41598-020-62321-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Jaskari, Joel
Sahlsten, Jaakko
Järnstedt, Jorma
Mehtonen, Helena
Karhu, Kalle
Sundqvist, Osku
Hietanen, Ari
Varjonen, Vesa
Mattila, Vesa
Kaski, Kimmo
Deep Learning Method for Mandibular Canal Segmentation in Dental Cone Beam Computed Tomography Volumes
title Deep Learning Method for Mandibular Canal Segmentation in Dental Cone Beam Computed Tomography Volumes
title_full Deep Learning Method for Mandibular Canal Segmentation in Dental Cone Beam Computed Tomography Volumes
title_fullStr Deep Learning Method for Mandibular Canal Segmentation in Dental Cone Beam Computed Tomography Volumes
title_full_unstemmed Deep Learning Method for Mandibular Canal Segmentation in Dental Cone Beam Computed Tomography Volumes
title_short Deep Learning Method for Mandibular Canal Segmentation in Dental Cone Beam Computed Tomography Volumes
title_sort deep learning method for mandibular canal segmentation in dental cone beam computed tomography volumes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7125134/
https://www.ncbi.nlm.nih.gov/pubmed/32245989
http://dx.doi.org/10.1038/s41598-020-62321-3
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