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Exploratory study on classification of lung cancer subtypes through a combined K-nearest neighbor classifier in breathomics

Accurate classification of adenocarcinoma (AC) and squamous cell carcinoma (SCC) in lung cancer is critical to physicians’ clinical decision-making. Exhaled breath analysis provides a tremendous potential approach in non-invasive diagnosis of lung cancer but was rarely reported for lung cancer subty...

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Autores principales: Wang, Chunyan, Long, Yijing, Li, Wenwen, Dai, Wei, Xie, Shaohua, Liu, Yuanling, Zhang, Yinchenxi, Liu, Mingxin, Tian, Yonghui, Li, Qiang, Duan, Yixiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7125212/
https://www.ncbi.nlm.nih.gov/pubmed/32246031
http://dx.doi.org/10.1038/s41598-020-62803-4
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author Wang, Chunyan
Long, Yijing
Li, Wenwen
Dai, Wei
Xie, Shaohua
Liu, Yuanling
Zhang, Yinchenxi
Liu, Mingxin
Tian, Yonghui
Li, Qiang
Duan, Yixiang
author_facet Wang, Chunyan
Long, Yijing
Li, Wenwen
Dai, Wei
Xie, Shaohua
Liu, Yuanling
Zhang, Yinchenxi
Liu, Mingxin
Tian, Yonghui
Li, Qiang
Duan, Yixiang
author_sort Wang, Chunyan
collection PubMed
description Accurate classification of adenocarcinoma (AC) and squamous cell carcinoma (SCC) in lung cancer is critical to physicians’ clinical decision-making. Exhaled breath analysis provides a tremendous potential approach in non-invasive diagnosis of lung cancer but was rarely reported for lung cancer subtypes classification. In this paper, we firstly proposed a combined method, integrating K-nearest neighbor classifier (KNN), borderline2-synthetic minority over-sampling technique (borderlin2-SMOTE), and feature reduction methods, to investigate the ability of exhaled breath to distinguish AC from SCC patients. The classification performance of the proposed method was compared with the results of four classification algorithms under different combinations of borderline2-SMOTE and feature reduction methods. The result indicated that the KNN classifier combining borderline2-SMOTE and feature reduction methods was the most promising method to discriminate AC from SCC patients and obtained the highest mean area under the receiver operating characteristic curve (0.63) and mean geometric mean (58.50) when compared to others classifiers. The result revealed that the combined algorithm could improve the classification performance of lung cancer subtypes in breathomics and suggested that combining non-invasive exhaled breath analysis with multivariate analysis is a promising screening method for informing treatment options and facilitating individualized treatment of lung cancer subtypes patients.
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spelling pubmed-71252122020-04-08 Exploratory study on classification of lung cancer subtypes through a combined K-nearest neighbor classifier in breathomics Wang, Chunyan Long, Yijing Li, Wenwen Dai, Wei Xie, Shaohua Liu, Yuanling Zhang, Yinchenxi Liu, Mingxin Tian, Yonghui Li, Qiang Duan, Yixiang Sci Rep Article Accurate classification of adenocarcinoma (AC) and squamous cell carcinoma (SCC) in lung cancer is critical to physicians’ clinical decision-making. Exhaled breath analysis provides a tremendous potential approach in non-invasive diagnosis of lung cancer but was rarely reported for lung cancer subtypes classification. In this paper, we firstly proposed a combined method, integrating K-nearest neighbor classifier (KNN), borderline2-synthetic minority over-sampling technique (borderlin2-SMOTE), and feature reduction methods, to investigate the ability of exhaled breath to distinguish AC from SCC patients. The classification performance of the proposed method was compared with the results of four classification algorithms under different combinations of borderline2-SMOTE and feature reduction methods. The result indicated that the KNN classifier combining borderline2-SMOTE and feature reduction methods was the most promising method to discriminate AC from SCC patients and obtained the highest mean area under the receiver operating characteristic curve (0.63) and mean geometric mean (58.50) when compared to others classifiers. The result revealed that the combined algorithm could improve the classification performance of lung cancer subtypes in breathomics and suggested that combining non-invasive exhaled breath analysis with multivariate analysis is a promising screening method for informing treatment options and facilitating individualized treatment of lung cancer subtypes patients. Nature Publishing Group UK 2020-04-03 /pmc/articles/PMC7125212/ /pubmed/32246031 http://dx.doi.org/10.1038/s41598-020-62803-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Wang, Chunyan
Long, Yijing
Li, Wenwen
Dai, Wei
Xie, Shaohua
Liu, Yuanling
Zhang, Yinchenxi
Liu, Mingxin
Tian, Yonghui
Li, Qiang
Duan, Yixiang
Exploratory study on classification of lung cancer subtypes through a combined K-nearest neighbor classifier in breathomics
title Exploratory study on classification of lung cancer subtypes through a combined K-nearest neighbor classifier in breathomics
title_full Exploratory study on classification of lung cancer subtypes through a combined K-nearest neighbor classifier in breathomics
title_fullStr Exploratory study on classification of lung cancer subtypes through a combined K-nearest neighbor classifier in breathomics
title_full_unstemmed Exploratory study on classification of lung cancer subtypes through a combined K-nearest neighbor classifier in breathomics
title_short Exploratory study on classification of lung cancer subtypes through a combined K-nearest neighbor classifier in breathomics
title_sort exploratory study on classification of lung cancer subtypes through a combined k-nearest neighbor classifier in breathomics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7125212/
https://www.ncbi.nlm.nih.gov/pubmed/32246031
http://dx.doi.org/10.1038/s41598-020-62803-4
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