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Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus

During dengue outbreaks, acute diagnosis at the patient's point of need followed by appropriate supportive therapy reduces morbidity and mortality. To facilitate needed diagnosis, we developed and optimized a reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay that dete...

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Autores principales: Dauner, Allison L., Mitra, Indrani, Gilliland, Theron, Seales, Sajeewane, Pal, Subhamoy, Yang, Shih-Chun, Guevara, Carolina, Chen, Jiann-Hwa, Liu, Yung-Chuan, Kochel, Tadeusz J., Wu, Shuenn-Jue L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. Published by Elsevier Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7126901/
https://www.ncbi.nlm.nih.gov/pubmed/26032430
http://dx.doi.org/10.1016/j.diagmicrobio.2015.05.004
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author Dauner, Allison L.
Mitra, Indrani
Gilliland, Theron
Seales, Sajeewane
Pal, Subhamoy
Yang, Shih-Chun
Guevara, Carolina
Chen, Jiann-Hwa
Liu, Yung-Chuan
Kochel, Tadeusz J.
Wu, Shuenn-Jue L.
author_facet Dauner, Allison L.
Mitra, Indrani
Gilliland, Theron
Seales, Sajeewane
Pal, Subhamoy
Yang, Shih-Chun
Guevara, Carolina
Chen, Jiann-Hwa
Liu, Yung-Chuan
Kochel, Tadeusz J.
Wu, Shuenn-Jue L.
author_sort Dauner, Allison L.
collection PubMed
description During dengue outbreaks, acute diagnosis at the patient's point of need followed by appropriate supportive therapy reduces morbidity and mortality. To facilitate needed diagnosis, we developed and optimized a reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay that detects all 4 serotypes of dengue virus (DENV). We used a quencher to reduce nonspecific amplification. The assay does not require expensive thermocyclers, utilizing a simple water bath to maintain the reaction at 63 °C. Results can be visualized using UV fluorescence, handheld readers, or lateral flow immunochromatographic tests. We report a sensitivity of 86.3% (95% confidence interval [CI], 72.7–94.8%) and specificity of 93.0% (95% CI, 83.0–98.1%) using a panel of clinical specimens characterized by DENV quantitative reverse transcription–polymerase chain reaction. This pan-serotype DENV RT-LAMP can be adapted to field-expedient formats where it can provide actionable diagnosis near the patient's point of need.
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spelling pubmed-71269012020-04-08 Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus Dauner, Allison L. Mitra, Indrani Gilliland, Theron Seales, Sajeewane Pal, Subhamoy Yang, Shih-Chun Guevara, Carolina Chen, Jiann-Hwa Liu, Yung-Chuan Kochel, Tadeusz J. Wu, Shuenn-Jue L. Diagn Microbiol Infect Dis Virology During dengue outbreaks, acute diagnosis at the patient's point of need followed by appropriate supportive therapy reduces morbidity and mortality. To facilitate needed diagnosis, we developed and optimized a reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay that detects all 4 serotypes of dengue virus (DENV). We used a quencher to reduce nonspecific amplification. The assay does not require expensive thermocyclers, utilizing a simple water bath to maintain the reaction at 63 °C. Results can be visualized using UV fluorescence, handheld readers, or lateral flow immunochromatographic tests. We report a sensitivity of 86.3% (95% confidence interval [CI], 72.7–94.8%) and specificity of 93.0% (95% CI, 83.0–98.1%) using a panel of clinical specimens characterized by DENV quantitative reverse transcription–polymerase chain reaction. This pan-serotype DENV RT-LAMP can be adapted to field-expedient formats where it can provide actionable diagnosis near the patient's point of need. Elsevier Inc. Published by Elsevier Inc. 2015-09 2015-05-15 /pmc/articles/PMC7126901/ /pubmed/26032430 http://dx.doi.org/10.1016/j.diagmicrobio.2015.05.004 Text en Copyright © 2015 Elsevier Inc. Published by Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Virology
Dauner, Allison L.
Mitra, Indrani
Gilliland, Theron
Seales, Sajeewane
Pal, Subhamoy
Yang, Shih-Chun
Guevara, Carolina
Chen, Jiann-Hwa
Liu, Yung-Chuan
Kochel, Tadeusz J.
Wu, Shuenn-Jue L.
Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus
title Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus
title_full Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus
title_fullStr Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus
title_full_unstemmed Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus
title_short Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus
title_sort development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus
topic Virology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7126901/
https://www.ncbi.nlm.nih.gov/pubmed/26032430
http://dx.doi.org/10.1016/j.diagmicrobio.2015.05.004
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