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Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus
During dengue outbreaks, acute diagnosis at the patient's point of need followed by appropriate supportive therapy reduces morbidity and mortality. To facilitate needed diagnosis, we developed and optimized a reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay that dete...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Inc. Published by Elsevier Inc.
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7126901/ https://www.ncbi.nlm.nih.gov/pubmed/26032430 http://dx.doi.org/10.1016/j.diagmicrobio.2015.05.004 |
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author | Dauner, Allison L. Mitra, Indrani Gilliland, Theron Seales, Sajeewane Pal, Subhamoy Yang, Shih-Chun Guevara, Carolina Chen, Jiann-Hwa Liu, Yung-Chuan Kochel, Tadeusz J. Wu, Shuenn-Jue L. |
author_facet | Dauner, Allison L. Mitra, Indrani Gilliland, Theron Seales, Sajeewane Pal, Subhamoy Yang, Shih-Chun Guevara, Carolina Chen, Jiann-Hwa Liu, Yung-Chuan Kochel, Tadeusz J. Wu, Shuenn-Jue L. |
author_sort | Dauner, Allison L. |
collection | PubMed |
description | During dengue outbreaks, acute diagnosis at the patient's point of need followed by appropriate supportive therapy reduces morbidity and mortality. To facilitate needed diagnosis, we developed and optimized a reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay that detects all 4 serotypes of dengue virus (DENV). We used a quencher to reduce nonspecific amplification. The assay does not require expensive thermocyclers, utilizing a simple water bath to maintain the reaction at 63 °C. Results can be visualized using UV fluorescence, handheld readers, or lateral flow immunochromatographic tests. We report a sensitivity of 86.3% (95% confidence interval [CI], 72.7–94.8%) and specificity of 93.0% (95% CI, 83.0–98.1%) using a panel of clinical specimens characterized by DENV quantitative reverse transcription–polymerase chain reaction. This pan-serotype DENV RT-LAMP can be adapted to field-expedient formats where it can provide actionable diagnosis near the patient's point of need. |
format | Online Article Text |
id | pubmed-7126901 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier Inc. Published by Elsevier Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-71269012020-04-08 Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus Dauner, Allison L. Mitra, Indrani Gilliland, Theron Seales, Sajeewane Pal, Subhamoy Yang, Shih-Chun Guevara, Carolina Chen, Jiann-Hwa Liu, Yung-Chuan Kochel, Tadeusz J. Wu, Shuenn-Jue L. Diagn Microbiol Infect Dis Virology During dengue outbreaks, acute diagnosis at the patient's point of need followed by appropriate supportive therapy reduces morbidity and mortality. To facilitate needed diagnosis, we developed and optimized a reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay that detects all 4 serotypes of dengue virus (DENV). We used a quencher to reduce nonspecific amplification. The assay does not require expensive thermocyclers, utilizing a simple water bath to maintain the reaction at 63 °C. Results can be visualized using UV fluorescence, handheld readers, or lateral flow immunochromatographic tests. We report a sensitivity of 86.3% (95% confidence interval [CI], 72.7–94.8%) and specificity of 93.0% (95% CI, 83.0–98.1%) using a panel of clinical specimens characterized by DENV quantitative reverse transcription–polymerase chain reaction. This pan-serotype DENV RT-LAMP can be adapted to field-expedient formats where it can provide actionable diagnosis near the patient's point of need. Elsevier Inc. Published by Elsevier Inc. 2015-09 2015-05-15 /pmc/articles/PMC7126901/ /pubmed/26032430 http://dx.doi.org/10.1016/j.diagmicrobio.2015.05.004 Text en Copyright © 2015 Elsevier Inc. Published by Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Virology Dauner, Allison L. Mitra, Indrani Gilliland, Theron Seales, Sajeewane Pal, Subhamoy Yang, Shih-Chun Guevara, Carolina Chen, Jiann-Hwa Liu, Yung-Chuan Kochel, Tadeusz J. Wu, Shuenn-Jue L. Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus |
title | Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus |
title_full | Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus |
title_fullStr | Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus |
title_full_unstemmed | Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus |
title_short | Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus |
title_sort | development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus |
topic | Virology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7126901/ https://www.ncbi.nlm.nih.gov/pubmed/26032430 http://dx.doi.org/10.1016/j.diagmicrobio.2015.05.004 |
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