Cargando…

Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure

BACKGROUND: Endogenous lectins are multifunctional effectors in cell physiology. Adding the sixth member of the galectin family in chicken, a model organism for systematic profiling of these adhesion/growth-regulatory proteins, is a step toward comprehensive network monitoring. METHODS: Database min...

Descripción completa

Detalles Bibliográficos
Autores principales: García Caballero, Gabriel, Flores-Ibarra, Andrea, Michalak, Malwina, Khasbiullina, Nailya, Bovin, Nicolai V., André, Sabine, Manning, Joachim C., Vértesy, Sabine, Ruiz, Federico M., Kaltner, Herbert, Kopitz, Jürgen, Romero, Antonio, Gabius, Hans-Joachim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7127388/
https://www.ncbi.nlm.nih.gov/pubmed/27268118
http://dx.doi.org/10.1016/j.bbagen.2016.06.001
_version_ 1783516349403758592
author García Caballero, Gabriel
Flores-Ibarra, Andrea
Michalak, Malwina
Khasbiullina, Nailya
Bovin, Nicolai V.
André, Sabine
Manning, Joachim C.
Vértesy, Sabine
Ruiz, Federico M.
Kaltner, Herbert
Kopitz, Jürgen
Romero, Antonio
Gabius, Hans-Joachim
author_facet García Caballero, Gabriel
Flores-Ibarra, Andrea
Michalak, Malwina
Khasbiullina, Nailya
Bovin, Nicolai V.
André, Sabine
Manning, Joachim C.
Vértesy, Sabine
Ruiz, Federico M.
Kaltner, Herbert
Kopitz, Jürgen
Romero, Antonio
Gabius, Hans-Joachim
author_sort García Caballero, Gabriel
collection PubMed
description BACKGROUND: Endogenous lectins are multifunctional effectors in cell physiology. Adding the sixth member of the galectin family in chicken, a model organism for systematic profiling of these adhesion/growth-regulatory proteins, is a step toward comprehensive network monitoring. METHODS: Database mining and computational data processing are applied for gene detection, chromosomal location and sequence alignments. Cloning, recombinant production and fusion-protein technology gain access to the protein, mass spectrometry and gel electrophoresis/filtration provide analytical data. Haemagglutination, glycan microarray and cell assays assess binding capacity, and crystallography of a shortened variant (also analyzed by ultracentrifugation and small angle X-ray scattering) determines its structure. RESULTS: The gene for the galectin-related protein (GRP) is present exclusively in vertebrates with high-level sequence conservation and similar chromosomal positioning. The chicken protein is monomeric and has lost the canonical galectin property of binding lactose. The crystal structure of the variant without the 36-amino-acid extension at the start provides explanations for this lack of binding. CONCLUSIONS: Chicken GRP is special within this family of six proteins by being unable to bind lactose. The documented high degree of sequence conservation among vertebrate orthologues confers the status of a model for delineating an assumedly shared functionality to this GRP. GENERAL SIGNIFICANCE: Biochemical characterization of a product of a gene under strong positive selection is a prerequisite for functional characterization. It is also essential for network monitoring by adding a new member to this lectin family.
format Online
Article
Text
id pubmed-7127388
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Elsevier B.V.
record_format MEDLINE/PubMed
spelling pubmed-71273882020-04-08 Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure García Caballero, Gabriel Flores-Ibarra, Andrea Michalak, Malwina Khasbiullina, Nailya Bovin, Nicolai V. André, Sabine Manning, Joachim C. Vértesy, Sabine Ruiz, Federico M. Kaltner, Herbert Kopitz, Jürgen Romero, Antonio Gabius, Hans-Joachim Biochim Biophys Acta Gen Subj Article BACKGROUND: Endogenous lectins are multifunctional effectors in cell physiology. Adding the sixth member of the galectin family in chicken, a model organism for systematic profiling of these adhesion/growth-regulatory proteins, is a step toward comprehensive network monitoring. METHODS: Database mining and computational data processing are applied for gene detection, chromosomal location and sequence alignments. Cloning, recombinant production and fusion-protein technology gain access to the protein, mass spectrometry and gel electrophoresis/filtration provide analytical data. Haemagglutination, glycan microarray and cell assays assess binding capacity, and crystallography of a shortened variant (also analyzed by ultracentrifugation and small angle X-ray scattering) determines its structure. RESULTS: The gene for the galectin-related protein (GRP) is present exclusively in vertebrates with high-level sequence conservation and similar chromosomal positioning. The chicken protein is monomeric and has lost the canonical galectin property of binding lactose. The crystal structure of the variant without the 36-amino-acid extension at the start provides explanations for this lack of binding. CONCLUSIONS: Chicken GRP is special within this family of six proteins by being unable to bind lactose. The documented high degree of sequence conservation among vertebrate orthologues confers the status of a model for delineating an assumedly shared functionality to this GRP. GENERAL SIGNIFICANCE: Biochemical characterization of a product of a gene under strong positive selection is a prerequisite for functional characterization. It is also essential for network monitoring by adding a new member to this lectin family. Elsevier B.V. 2016-10 2016-06-03 /pmc/articles/PMC7127388/ /pubmed/27268118 http://dx.doi.org/10.1016/j.bbagen.2016.06.001 Text en © 2016 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
García Caballero, Gabriel
Flores-Ibarra, Andrea
Michalak, Malwina
Khasbiullina, Nailya
Bovin, Nicolai V.
André, Sabine
Manning, Joachim C.
Vértesy, Sabine
Ruiz, Federico M.
Kaltner, Herbert
Kopitz, Jürgen
Romero, Antonio
Gabius, Hans-Joachim
Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure
title Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure
title_full Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure
title_fullStr Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure
title_full_unstemmed Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure
title_short Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure
title_sort galectin-related protein: an integral member of the network of chicken galectins 1. from strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7127388/
https://www.ncbi.nlm.nih.gov/pubmed/27268118
http://dx.doi.org/10.1016/j.bbagen.2016.06.001
work_keys_str_mv AT garciacaballerogabriel galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT floresibarraandrea galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT michalakmalwina galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT khasbiullinanailya galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT bovinnicolaiv galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT andresabine galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT manningjoachimc galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT vertesysabine galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT ruizfedericom galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT kaltnerherbert galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT kopitzjurgen galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT romeroantonio galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure
AT gabiushansjoachim galectinrelatedproteinanintegralmemberofthenetworkofchickengalectins1fromstrongsequenceconservationofthegeneconfinedtovertebratestobiochemicalcharacteristicsofthechickenproteinanditscrystalstructure