Cargando…

Integrative analysis of highly mutated genes in hepatitis B virus‐related hepatic carcinoma

Gene mutation is responsible for the development of hepatocellular carcinoma (HCC) with hepatitis B virus (HBV) infection; however, the characteristics and associated biological functions of highly mutated genes, in which the mutation frequencies are at least 5% in HCC patients with HBV infection, a...

Descripción completa

Detalles Bibliográficos
Autores principales: Kong, Fanyun, Kong, Delong, Yang, Xiaoying, Yuan, Dongchen, Zhang, Ning, Hua, Xuan, You, Hongjuan, Zheng, Kuiyang, Tang, Renxian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7131865/
https://www.ncbi.nlm.nih.gov/pubmed/32017470
http://dx.doi.org/10.1002/cam4.2903
_version_ 1783517336529010688
author Kong, Fanyun
Kong, Delong
Yang, Xiaoying
Yuan, Dongchen
Zhang, Ning
Hua, Xuan
You, Hongjuan
Zheng, Kuiyang
Tang, Renxian
author_facet Kong, Fanyun
Kong, Delong
Yang, Xiaoying
Yuan, Dongchen
Zhang, Ning
Hua, Xuan
You, Hongjuan
Zheng, Kuiyang
Tang, Renxian
author_sort Kong, Fanyun
collection PubMed
description Gene mutation is responsible for the development of hepatocellular carcinoma (HCC) with hepatitis B virus (HBV) infection; however, the characteristics and associated biological functions of highly mutated genes, in which the mutation frequencies are at least 5% in HCC patients with HBV infection, are not clearly evaluated. In the study, we analyzed the information regarding somatic mutation obtained by whole‐exome sequencing in 280 HBV‐related HCC tissues from public databases and published studies. Via integrative analysis, 78 genes, including TP53, TTN, MUC16, CTNNB1, and PCLO were summarized as highly mutated genes, and some of these mutated genes were further identified as cancer driver genes. Besides, we discovered that the highly mutated genes were enriched with various biological functions and pathways. The expression of many of highly mutated genes was found to be significantly altered in HBV‐related HCC, and several highly mutated genes were related to a variety of clinical factors and associated with the poor survival of the disease. Taken together, these results could enrich our understanding of highly mutated genes and their relationships with HBV‐related HCC. Some of the identified highly mutated genes might be used as novel biomarkers of disease prognosis, or as molecular targets for the treatment of HCC with HBV infection.
format Online
Article
Text
id pubmed-7131865
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-71318652020-04-06 Integrative analysis of highly mutated genes in hepatitis B virus‐related hepatic carcinoma Kong, Fanyun Kong, Delong Yang, Xiaoying Yuan, Dongchen Zhang, Ning Hua, Xuan You, Hongjuan Zheng, Kuiyang Tang, Renxian Cancer Med Cancer Biology Gene mutation is responsible for the development of hepatocellular carcinoma (HCC) with hepatitis B virus (HBV) infection; however, the characteristics and associated biological functions of highly mutated genes, in which the mutation frequencies are at least 5% in HCC patients with HBV infection, are not clearly evaluated. In the study, we analyzed the information regarding somatic mutation obtained by whole‐exome sequencing in 280 HBV‐related HCC tissues from public databases and published studies. Via integrative analysis, 78 genes, including TP53, TTN, MUC16, CTNNB1, and PCLO were summarized as highly mutated genes, and some of these mutated genes were further identified as cancer driver genes. Besides, we discovered that the highly mutated genes were enriched with various biological functions and pathways. The expression of many of highly mutated genes was found to be significantly altered in HBV‐related HCC, and several highly mutated genes were related to a variety of clinical factors and associated with the poor survival of the disease. Taken together, these results could enrich our understanding of highly mutated genes and their relationships with HBV‐related HCC. Some of the identified highly mutated genes might be used as novel biomarkers of disease prognosis, or as molecular targets for the treatment of HCC with HBV infection. John Wiley and Sons Inc. 2020-02-04 /pmc/articles/PMC7131865/ /pubmed/32017470 http://dx.doi.org/10.1002/cam4.2903 Text en © 2020 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Cancer Biology
Kong, Fanyun
Kong, Delong
Yang, Xiaoying
Yuan, Dongchen
Zhang, Ning
Hua, Xuan
You, Hongjuan
Zheng, Kuiyang
Tang, Renxian
Integrative analysis of highly mutated genes in hepatitis B virus‐related hepatic carcinoma
title Integrative analysis of highly mutated genes in hepatitis B virus‐related hepatic carcinoma
title_full Integrative analysis of highly mutated genes in hepatitis B virus‐related hepatic carcinoma
title_fullStr Integrative analysis of highly mutated genes in hepatitis B virus‐related hepatic carcinoma
title_full_unstemmed Integrative analysis of highly mutated genes in hepatitis B virus‐related hepatic carcinoma
title_short Integrative analysis of highly mutated genes in hepatitis B virus‐related hepatic carcinoma
title_sort integrative analysis of highly mutated genes in hepatitis b virus‐related hepatic carcinoma
topic Cancer Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7131865/
https://www.ncbi.nlm.nih.gov/pubmed/32017470
http://dx.doi.org/10.1002/cam4.2903
work_keys_str_mv AT kongfanyun integrativeanalysisofhighlymutatedgenesinhepatitisbvirusrelatedhepaticcarcinoma
AT kongdelong integrativeanalysisofhighlymutatedgenesinhepatitisbvirusrelatedhepaticcarcinoma
AT yangxiaoying integrativeanalysisofhighlymutatedgenesinhepatitisbvirusrelatedhepaticcarcinoma
AT yuandongchen integrativeanalysisofhighlymutatedgenesinhepatitisbvirusrelatedhepaticcarcinoma
AT zhangning integrativeanalysisofhighlymutatedgenesinhepatitisbvirusrelatedhepaticcarcinoma
AT huaxuan integrativeanalysisofhighlymutatedgenesinhepatitisbvirusrelatedhepaticcarcinoma
AT youhongjuan integrativeanalysisofhighlymutatedgenesinhepatitisbvirusrelatedhepaticcarcinoma
AT zhengkuiyang integrativeanalysisofhighlymutatedgenesinhepatitisbvirusrelatedhepaticcarcinoma
AT tangrenxian integrativeanalysisofhighlymutatedgenesinhepatitisbvirusrelatedhepaticcarcinoma