Viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in Jiangsu, China

Sapoviruses (SAVs), including several genogroups (GI to GV), are one of the causes of acute gastroenteritis (AGE). In this study, viral metagenomics revealed the presence of sapoviruses of different genogroups in stool from children with AGE. Eight different complete SAV genomes were determined, of...

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Autores principales: Li, Wang, Dong, Surong, Xu, Juan, Zhou, Xiaobin, Han, Junling, Xie, Zhaqing, Gong, Qin, Peng, Hailin, Zhou, Chenglin, Lin, Mei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2020
Materias:
Brief Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7131977/
https://www.ncbi.nlm.nih.gov/pubmed/32048042
http://dx.doi.org/10.1007/s00705-020-04549-y
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author Li, Wang
Dong, Surong
Xu, Juan
Zhou, Xiaobin
Han, Junling
Xie, Zhaqing
Gong, Qin
Peng, Hailin
Zhou, Chenglin
Lin, Mei
author_facet Li, Wang
Dong, Surong
Xu, Juan
Zhou, Xiaobin
Han, Junling
Xie, Zhaqing
Gong, Qin
Peng, Hailin
Zhou, Chenglin
Lin, Mei
author_sort Li, Wang
collection PubMed
description Sapoviruses (SAVs), including several genogroups (GI to GV), are one of the causes of acute gastroenteritis (AGE). In this study, viral metagenomics revealed the presence of sapoviruses of different genogroups in stool from children with AGE. Eight different complete SAV genomes were determined, of which five belonged to GI and the other three belonged to GII, GIV and GV, respectively. Although they were highly similar to published sequences, the GIV and GV were the first complete genome sequences of these SAVs found in China. In a prevalence investigation, 19% of subjects with AGE were positive for SAVs, while none of the control group was positive.
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spelling pubmed-71319772020-04-09 Viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in Jiangsu, China Li, Wang Dong, Surong Xu, Juan Zhou, Xiaobin Han, Junling Xie, Zhaqing Gong, Qin Peng, Hailin Zhou, Chenglin Lin, Mei Arch Virol Brief Report Sapoviruses (SAVs), including several genogroups (GI to GV), are one of the causes of acute gastroenteritis (AGE). In this study, viral metagenomics revealed the presence of sapoviruses of different genogroups in stool from children with AGE. Eight different complete SAV genomes were determined, of which five belonged to GI and the other three belonged to GII, GIV and GV, respectively. Although they were highly similar to published sequences, the GIV and GV were the first complete genome sequences of these SAVs found in China. In a prevalence investigation, 19% of subjects with AGE were positive for SAVs, while none of the control group was positive. Springer Vienna 2020-02-11 2020 /pmc/articles/PMC7131977/ /pubmed/32048042 http://dx.doi.org/10.1007/s00705-020-04549-y Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Brief Report
Li, Wang
Dong, Surong
Xu, Juan
Zhou, Xiaobin
Han, Junling
Xie, Zhaqing
Gong, Qin
Peng, Hailin
Zhou, Chenglin
Lin, Mei
Viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in Jiangsu, China
title Viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in Jiangsu, China
title_full Viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in Jiangsu, China
title_fullStr Viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in Jiangsu, China
title_full_unstemmed Viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in Jiangsu, China
title_short Viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in Jiangsu, China
title_sort viral metagenomics reveals sapoviruses of different genogroups in stool samples from children with acute gastroenteritis in jiangsu, china
topic Brief Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7131977/
https://www.ncbi.nlm.nih.gov/pubmed/32048042
http://dx.doi.org/10.1007/s00705-020-04549-y
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