Cargando…

PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data

Over the past decade, ptychography has been proven to be a robust tool for non-destructive high-resolution quantitative electron, X-ray and optical microscopy. It allows for quantitative reconstruction of the specimen’s transmissivity, as well as recovery of the illuminating wavefront. Additionally,...

Descripción completa

Detalles Bibliográficos
Autores principales: Wakonig, Klaus, Stadler, Hans-Christian, Odstrčil, Michal, Tsai, Esther H. R., Diaz, Ana, Holler, Mirko, Usov, Ivan, Raabe, Jörg, Menzel, Andreas, Guizar-Sicairos, Manuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7133065/
https://www.ncbi.nlm.nih.gov/pubmed/32280327
http://dx.doi.org/10.1107/S1600576720001776
_version_ 1783517557816295424
author Wakonig, Klaus
Stadler, Hans-Christian
Odstrčil, Michal
Tsai, Esther H. R.
Diaz, Ana
Holler, Mirko
Usov, Ivan
Raabe, Jörg
Menzel, Andreas
Guizar-Sicairos, Manuel
author_facet Wakonig, Klaus
Stadler, Hans-Christian
Odstrčil, Michal
Tsai, Esther H. R.
Diaz, Ana
Holler, Mirko
Usov, Ivan
Raabe, Jörg
Menzel, Andreas
Guizar-Sicairos, Manuel
author_sort Wakonig, Klaus
collection PubMed
description Over the past decade, ptychography has been proven to be a robust tool for non-destructive high-resolution quantitative electron, X-ray and optical microscopy. It allows for quantitative reconstruction of the specimen’s transmissivity, as well as recovery of the illuminating wavefront. Additionally, various algorithms have been developed to account for systematic errors and improved convergence. With fast ptychographic microscopes and more advanced algorithms, both the complexity of the reconstruction task and the data volume increase significantly. PtychoShelves is a software package which combines high-level modularity for easy and fast changes to the data-processing pipeline, and high-performance computing on CPUs and GPUs.
format Online
Article
Text
id pubmed-7133065
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-71330652020-04-10 PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data Wakonig, Klaus Stadler, Hans-Christian Odstrčil, Michal Tsai, Esther H. R. Diaz, Ana Holler, Mirko Usov, Ivan Raabe, Jörg Menzel, Andreas Guizar-Sicairos, Manuel J Appl Crystallogr Computer Programs Over the past decade, ptychography has been proven to be a robust tool for non-destructive high-resolution quantitative electron, X-ray and optical microscopy. It allows for quantitative reconstruction of the specimen’s transmissivity, as well as recovery of the illuminating wavefront. Additionally, various algorithms have been developed to account for systematic errors and improved convergence. With fast ptychographic microscopes and more advanced algorithms, both the complexity of the reconstruction task and the data volume increase significantly. PtychoShelves is a software package which combines high-level modularity for easy and fast changes to the data-processing pipeline, and high-performance computing on CPUs and GPUs. International Union of Crystallography 2020-03-13 /pmc/articles/PMC7133065/ /pubmed/32280327 http://dx.doi.org/10.1107/S1600576720001776 Text en © Klaus Wakonig et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Computer Programs
Wakonig, Klaus
Stadler, Hans-Christian
Odstrčil, Michal
Tsai, Esther H. R.
Diaz, Ana
Holler, Mirko
Usov, Ivan
Raabe, Jörg
Menzel, Andreas
Guizar-Sicairos, Manuel
PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
title PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
title_full PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
title_fullStr PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
title_full_unstemmed PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
title_short PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
title_sort ptychoshelves, a versatile high-level framework for high-performance analysis of ptychographic data
topic Computer Programs
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7133065/
https://www.ncbi.nlm.nih.gov/pubmed/32280327
http://dx.doi.org/10.1107/S1600576720001776
work_keys_str_mv AT wakonigklaus ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata
AT stadlerhanschristian ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata
AT odstrcilmichal ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata
AT tsaiestherhr ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata
AT diazana ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata
AT hollermirko ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata
AT usovivan ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata
AT raabejorg ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata
AT menzelandreas ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata
AT guizarsicairosmanuel ptychoshelvesaversatilehighlevelframeworkforhighperformanceanalysisofptychographicdata