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PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
Over the past decade, ptychography has been proven to be a robust tool for non-destructive high-resolution quantitative electron, X-ray and optical microscopy. It allows for quantitative reconstruction of the specimen’s transmissivity, as well as recovery of the illuminating wavefront. Additionally,...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7133065/ https://www.ncbi.nlm.nih.gov/pubmed/32280327 http://dx.doi.org/10.1107/S1600576720001776 |
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author | Wakonig, Klaus Stadler, Hans-Christian Odstrčil, Michal Tsai, Esther H. R. Diaz, Ana Holler, Mirko Usov, Ivan Raabe, Jörg Menzel, Andreas Guizar-Sicairos, Manuel |
author_facet | Wakonig, Klaus Stadler, Hans-Christian Odstrčil, Michal Tsai, Esther H. R. Diaz, Ana Holler, Mirko Usov, Ivan Raabe, Jörg Menzel, Andreas Guizar-Sicairos, Manuel |
author_sort | Wakonig, Klaus |
collection | PubMed |
description | Over the past decade, ptychography has been proven to be a robust tool for non-destructive high-resolution quantitative electron, X-ray and optical microscopy. It allows for quantitative reconstruction of the specimen’s transmissivity, as well as recovery of the illuminating wavefront. Additionally, various algorithms have been developed to account for systematic errors and improved convergence. With fast ptychographic microscopes and more advanced algorithms, both the complexity of the reconstruction task and the data volume increase significantly. PtychoShelves is a software package which combines high-level modularity for easy and fast changes to the data-processing pipeline, and high-performance computing on CPUs and GPUs. |
format | Online Article Text |
id | pubmed-7133065 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-71330652020-04-10 PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data Wakonig, Klaus Stadler, Hans-Christian Odstrčil, Michal Tsai, Esther H. R. Diaz, Ana Holler, Mirko Usov, Ivan Raabe, Jörg Menzel, Andreas Guizar-Sicairos, Manuel J Appl Crystallogr Computer Programs Over the past decade, ptychography has been proven to be a robust tool for non-destructive high-resolution quantitative electron, X-ray and optical microscopy. It allows for quantitative reconstruction of the specimen’s transmissivity, as well as recovery of the illuminating wavefront. Additionally, various algorithms have been developed to account for systematic errors and improved convergence. With fast ptychographic microscopes and more advanced algorithms, both the complexity of the reconstruction task and the data volume increase significantly. PtychoShelves is a software package which combines high-level modularity for easy and fast changes to the data-processing pipeline, and high-performance computing on CPUs and GPUs. International Union of Crystallography 2020-03-13 /pmc/articles/PMC7133065/ /pubmed/32280327 http://dx.doi.org/10.1107/S1600576720001776 Text en © Klaus Wakonig et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Computer Programs Wakonig, Klaus Stadler, Hans-Christian Odstrčil, Michal Tsai, Esther H. R. Diaz, Ana Holler, Mirko Usov, Ivan Raabe, Jörg Menzel, Andreas Guizar-Sicairos, Manuel PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data |
title |
PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
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title_full |
PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
|
title_fullStr |
PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
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title_full_unstemmed |
PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
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title_short |
PtychoShelves, a versatile high-level framework for high-performance analysis of ptychographic data
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title_sort | ptychoshelves, a versatile high-level framework for high-performance analysis of ptychographic data |
topic | Computer Programs |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7133065/ https://www.ncbi.nlm.nih.gov/pubmed/32280327 http://dx.doi.org/10.1107/S1600576720001776 |
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