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Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort
Melanoma is a highly aggressive cancer, attracting increasing attention worldwide. The 5-year survival rate of patients with metastatic melanoma is low. Therefore, it is critical to identify potential effective biomarkers for diagnosis of melanoma metastasis. In the present study, the melanoma cohor...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7136491/ https://www.ncbi.nlm.nih.gov/pubmed/32296685 http://dx.doi.org/10.3389/fbioe.2020.00206 |
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author | Sheng, Yang Yanping, Cheng Tong, Liu Ning, Liu Yufeng, Liu Geyu, Liang |
author_facet | Sheng, Yang Yanping, Cheng Tong, Liu Ning, Liu Yufeng, Liu Geyu, Liang |
author_sort | Sheng, Yang |
collection | PubMed |
description | Melanoma is a highly aggressive cancer, attracting increasing attention worldwide. The 5-year survival rate of patients with metastatic melanoma is low. Therefore, it is critical to identify potential effective biomarkers for diagnosis of melanoma metastasis. In the present study, the melanoma cohort and immune genes were obtained from the Cancer Genome Atlas (TCGA) database and the ImmPort database, respectively. Then, we constructed the immune risk score (IRS) using univariate and multivariate logistic analysis. The area under the curve (AUC) of IRS in sequencing samples and the initial diagnosis patients was 0.90 and 0.80, respectively. Besides, IRS could add benefits for metastasis diagnosis. For sequencing samples, IRS (OR = 16.35, 95% CI = 8.74–30.59) increased the odds for melanoma metastasis. Similar results were obtained in the initial diagnosis patients (OR = 8.93, 95% CI = 3.53–22.61). A composite nomogram was built based on IRS and clinical information with well-fitted calibration curves. We further used other independent melanoma cohorts from Gene Expression Omnibus (GEO) databases to confirm the reliability and validity of the IRS (AUC > 0.75, OR > 1.04, and P value < 0.01 in all cohorts). In conclusion, IRS is significantly associated with melanoma metastasis and can be a novel effective signature for predicting the metastasis risk. |
format | Online Article Text |
id | pubmed-7136491 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-71364912020-04-15 Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort Sheng, Yang Yanping, Cheng Tong, Liu Ning, Liu Yufeng, Liu Geyu, Liang Front Bioeng Biotechnol Bioengineering and Biotechnology Melanoma is a highly aggressive cancer, attracting increasing attention worldwide. The 5-year survival rate of patients with metastatic melanoma is low. Therefore, it is critical to identify potential effective biomarkers for diagnosis of melanoma metastasis. In the present study, the melanoma cohort and immune genes were obtained from the Cancer Genome Atlas (TCGA) database and the ImmPort database, respectively. Then, we constructed the immune risk score (IRS) using univariate and multivariate logistic analysis. The area under the curve (AUC) of IRS in sequencing samples and the initial diagnosis patients was 0.90 and 0.80, respectively. Besides, IRS could add benefits for metastasis diagnosis. For sequencing samples, IRS (OR = 16.35, 95% CI = 8.74–30.59) increased the odds for melanoma metastasis. Similar results were obtained in the initial diagnosis patients (OR = 8.93, 95% CI = 3.53–22.61). A composite nomogram was built based on IRS and clinical information with well-fitted calibration curves. We further used other independent melanoma cohorts from Gene Expression Omnibus (GEO) databases to confirm the reliability and validity of the IRS (AUC > 0.75, OR > 1.04, and P value < 0.01 in all cohorts). In conclusion, IRS is significantly associated with melanoma metastasis and can be a novel effective signature for predicting the metastasis risk. Frontiers Media S.A. 2020-03-31 /pmc/articles/PMC7136491/ /pubmed/32296685 http://dx.doi.org/10.3389/fbioe.2020.00206 Text en Copyright © 2020 Sheng, Yanping, Tong, Ning, Yufeng and Geyu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioengineering and Biotechnology Sheng, Yang Yanping, Cheng Tong, Liu Ning, Liu Yufeng, Liu Geyu, Liang Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort |
title | Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort |
title_full | Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort |
title_fullStr | Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort |
title_full_unstemmed | Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort |
title_short | Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort |
title_sort | predicting the risk of melanoma metastasis using an immune risk score in the melanoma cohort |
topic | Bioengineering and Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7136491/ https://www.ncbi.nlm.nih.gov/pubmed/32296685 http://dx.doi.org/10.3389/fbioe.2020.00206 |
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