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Draft Genome Sequence of Pseudarthrobacter phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated From the Medicinal Plant Pellaea calomelanos
Pseudarthrobacter phenanthrenivorans strain MHSD1 is a bacterial endophyte isolated from sterilized leaves of Pellaea calomelanos, a medicinal plant capable of growing in arid environments. Here, we report the draft genome sequence and annotation of this bacterial endophyte. The draft genome sequenc...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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SAGE Publications
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7136937/ https://www.ncbi.nlm.nih.gov/pubmed/32284671 http://dx.doi.org/10.1177/1176934320913257 |
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author | Tshishonga, Khuthadzo Serepa-Dlamini, Mahloro Hope |
author_facet | Tshishonga, Khuthadzo Serepa-Dlamini, Mahloro Hope |
author_sort | Tshishonga, Khuthadzo |
collection | PubMed |
description | Pseudarthrobacter phenanthrenivorans strain MHSD1 is a bacterial endophyte isolated from sterilized leaves of Pellaea calomelanos, a medicinal plant capable of growing in arid environments. Here, we report the draft genome sequence and annotation of this bacterial endophyte. The draft genome sequence of P. phenanthrenivorans strain MHSD1 has 4 450 468 bp with a G + C content of 65.30%. The National Center for Biotechnology Information Prokaryotic Genome Annotation Pipeline identified a total of 4004 protein-coding genes, 56 genes coding for RNAs, and 82 pseudogenes. Biosynthesis pathways for various phytohormones such as auxin, salicylic acid, ethylene, cytokinin, jasmonic acid, abscisic acid, and gibberellins were identified. Putative genes involved in various characteristics of bacterial endophyte lifestyle such as transport, motility, adhesion, membrane proteins, secretion and delivery systems, plant cell wall modification, and detoxification were identified. Phylogenomic analysis showed P. phenanthrenivorans strain MHSD1 to be a subspecies of P. phenanthrenivorans Sphe3. |
format | Online Article Text |
id | pubmed-7136937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-71369372020-04-13 Draft Genome Sequence of Pseudarthrobacter phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated From the Medicinal Plant Pellaea calomelanos Tshishonga, Khuthadzo Serepa-Dlamini, Mahloro Hope Evol Bioinform Online Short Report Pseudarthrobacter phenanthrenivorans strain MHSD1 is a bacterial endophyte isolated from sterilized leaves of Pellaea calomelanos, a medicinal plant capable of growing in arid environments. Here, we report the draft genome sequence and annotation of this bacterial endophyte. The draft genome sequence of P. phenanthrenivorans strain MHSD1 has 4 450 468 bp with a G + C content of 65.30%. The National Center for Biotechnology Information Prokaryotic Genome Annotation Pipeline identified a total of 4004 protein-coding genes, 56 genes coding for RNAs, and 82 pseudogenes. Biosynthesis pathways for various phytohormones such as auxin, salicylic acid, ethylene, cytokinin, jasmonic acid, abscisic acid, and gibberellins were identified. Putative genes involved in various characteristics of bacterial endophyte lifestyle such as transport, motility, adhesion, membrane proteins, secretion and delivery systems, plant cell wall modification, and detoxification were identified. Phylogenomic analysis showed P. phenanthrenivorans strain MHSD1 to be a subspecies of P. phenanthrenivorans Sphe3. SAGE Publications 2020-04-06 /pmc/articles/PMC7136937/ /pubmed/32284671 http://dx.doi.org/10.1177/1176934320913257 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/ This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Short Report Tshishonga, Khuthadzo Serepa-Dlamini, Mahloro Hope Draft Genome Sequence of Pseudarthrobacter phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated From the Medicinal Plant Pellaea calomelanos |
title | Draft Genome Sequence of Pseudarthrobacter
phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated
From the Medicinal Plant Pellaea calomelanos |
title_full | Draft Genome Sequence of Pseudarthrobacter
phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated
From the Medicinal Plant Pellaea calomelanos |
title_fullStr | Draft Genome Sequence of Pseudarthrobacter
phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated
From the Medicinal Plant Pellaea calomelanos |
title_full_unstemmed | Draft Genome Sequence of Pseudarthrobacter
phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated
From the Medicinal Plant Pellaea calomelanos |
title_short | Draft Genome Sequence of Pseudarthrobacter
phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated
From the Medicinal Plant Pellaea calomelanos |
title_sort | draft genome sequence of pseudarthrobacter
phenanthrenivorans strain mhsd1, a bacterial endophyte isolated
from the medicinal plant pellaea calomelanos |
topic | Short Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7136937/ https://www.ncbi.nlm.nih.gov/pubmed/32284671 http://dx.doi.org/10.1177/1176934320913257 |
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