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A LASSO-derived risk model for long-term mortality in Chinese patients with acute coronary syndrome

BACKGROUND: The formal risk assessment is essential in the management of acute coronary syndrome (ACS). In this study, we develop a risk model for the prediction of 3-year mortality for Chinese ACS patients with machine learning algorithms. METHODS: A total of 2174 consecutive patients who underwent...

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Autores principales: Li, Yi-ming, Li, Zhuo-lun, Chen, Fei, Liu, Qi, Peng, Yong, Chen, Mao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7137217/
https://www.ncbi.nlm.nih.gov/pubmed/32252780
http://dx.doi.org/10.1186/s12967-020-02319-7
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author Li, Yi-ming
Li, Zhuo-lun
Chen, Fei
Liu, Qi
Peng, Yong
Chen, Mao
author_facet Li, Yi-ming
Li, Zhuo-lun
Chen, Fei
Liu, Qi
Peng, Yong
Chen, Mao
author_sort Li, Yi-ming
collection PubMed
description BACKGROUND: The formal risk assessment is essential in the management of acute coronary syndrome (ACS). In this study, we develop a risk model for the prediction of 3-year mortality for Chinese ACS patients with machine learning algorithms. METHODS: A total of 2174 consecutive patients who underwent angiography with ACS were enrolled. The missing data among baseline characteristics were imputed using the MissForest algorithm based on random forest method. In model development, a least absolute shrinkage and selection operator (LASSO) derived Cox regression with internal tenfold cross-validation was used to identify the predictors for 3-year mortality. The clinical performance was assessed with decision curve analysis. RESULTS: The average follow-up period was 27.82 ± 13.73 months; during the 3 years of follow up, 193 patients died (mortality rate 8.88%). The Kaplan–Meier estimate of 3-year mortality was 0.91 (95% confidence interval (CI): 0.890.92). After feature selection, 6 predictors were identified: Age,” “Creatinine,” “Hemoglobin,” “Platelets,” “aspartate transaminase (AST)” and “left ventricular ejection fraction (LVEF)”. At tenfold internal validation, our risk model performed well in both discrimination (area under curve (AUC) of receiver operating characteristic (ROC) analysis was 0.768) and calibration (calibration slope was approximately 0.711). As a comparison, the AUC and calibration slope were 0.701 and 0.203 in Global Registry of Acute Coronary Events (GRACE) risk score, respectively. Additionally, the highest net benefit of our model within the entire range of threshold probability for clinical intervention by decision curve analysis demonstrated the superiority of it in daily practice. CONCLUSION: Our study developed a prediction model for 3-year morality in Chinese ACS patients. The methods of missing data imputation and model derivation base on machine learning algorithms improved the ability of prediction. . Trial registration ChiCTR, ChiCTR-OOC-17010433. Registered 17 February 2017–Retrospectively registered
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spelling pubmed-71372172020-04-11 A LASSO-derived risk model for long-term mortality in Chinese patients with acute coronary syndrome Li, Yi-ming Li, Zhuo-lun Chen, Fei Liu, Qi Peng, Yong Chen, Mao J Transl Med Research BACKGROUND: The formal risk assessment is essential in the management of acute coronary syndrome (ACS). In this study, we develop a risk model for the prediction of 3-year mortality for Chinese ACS patients with machine learning algorithms. METHODS: A total of 2174 consecutive patients who underwent angiography with ACS were enrolled. The missing data among baseline characteristics were imputed using the MissForest algorithm based on random forest method. In model development, a least absolute shrinkage and selection operator (LASSO) derived Cox regression with internal tenfold cross-validation was used to identify the predictors for 3-year mortality. The clinical performance was assessed with decision curve analysis. RESULTS: The average follow-up period was 27.82 ± 13.73 months; during the 3 years of follow up, 193 patients died (mortality rate 8.88%). The Kaplan–Meier estimate of 3-year mortality was 0.91 (95% confidence interval (CI): 0.890.92). After feature selection, 6 predictors were identified: Age,” “Creatinine,” “Hemoglobin,” “Platelets,” “aspartate transaminase (AST)” and “left ventricular ejection fraction (LVEF)”. At tenfold internal validation, our risk model performed well in both discrimination (area under curve (AUC) of receiver operating characteristic (ROC) analysis was 0.768) and calibration (calibration slope was approximately 0.711). As a comparison, the AUC and calibration slope were 0.701 and 0.203 in Global Registry of Acute Coronary Events (GRACE) risk score, respectively. Additionally, the highest net benefit of our model within the entire range of threshold probability for clinical intervention by decision curve analysis demonstrated the superiority of it in daily practice. CONCLUSION: Our study developed a prediction model for 3-year morality in Chinese ACS patients. The methods of missing data imputation and model derivation base on machine learning algorithms improved the ability of prediction. . Trial registration ChiCTR, ChiCTR-OOC-17010433. Registered 17 February 2017–Retrospectively registered BioMed Central 2020-04-06 /pmc/articles/PMC7137217/ /pubmed/32252780 http://dx.doi.org/10.1186/s12967-020-02319-7 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Li, Yi-ming
Li, Zhuo-lun
Chen, Fei
Liu, Qi
Peng, Yong
Chen, Mao
A LASSO-derived risk model for long-term mortality in Chinese patients with acute coronary syndrome
title A LASSO-derived risk model for long-term mortality in Chinese patients with acute coronary syndrome
title_full A LASSO-derived risk model for long-term mortality in Chinese patients with acute coronary syndrome
title_fullStr A LASSO-derived risk model for long-term mortality in Chinese patients with acute coronary syndrome
title_full_unstemmed A LASSO-derived risk model for long-term mortality in Chinese patients with acute coronary syndrome
title_short A LASSO-derived risk model for long-term mortality in Chinese patients with acute coronary syndrome
title_sort lasso-derived risk model for long-term mortality in chinese patients with acute coronary syndrome
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7137217/
https://www.ncbi.nlm.nih.gov/pubmed/32252780
http://dx.doi.org/10.1186/s12967-020-02319-7
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