Cargando…
Alignment- and reference-free phylogenomics with colored de Bruijn graphs
BACKGROUND: The increasing amount of available genome sequence data enables large-scale comparative studies. A common task is the inference of phylogenies—a challenging task if close reference sequences are not available, genome sequences are incompletely assembled, or the high number of genomes pre...
Autor principal: | Wittler, Roland |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7137503/ https://www.ncbi.nlm.nih.gov/pubmed/32280365 http://dx.doi.org/10.1186/s13015-020-00164-3 |
Ejemplares similares
-
BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs
por: Heydari, Mahdi, et al.
Publicado: (2018) -
Population-scale detection of non-reference sequence variants using colored de Bruijn graphs
por: Krannich, Thomas, et al.
Publicado: (2021) -
Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph
por: Benoit, Gaëtan, et al.
Publicado: (2015) -
Building large updatable colored de Bruijn graphs via merging
por: Muggli, Martin D, et al.
Publicado: (2019) -
Read mapping on de Bruijn graphs
por: Limasset, Antoine, et al.
Publicado: (2016)