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The temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions

We present the data concerning the clustering of sense and antisense amino acid pairs into polar, nonpolar and neutral groups, as measured using hydrophobicity parameter—logarithmic equilibrium constants (Log(10) K(w>c))—at 25 °C and 100 °C (Wolfenden et al., 2015). The Log(10) K(w>c), values,...

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Autores principales: Štambuk, Nikola, Konjevoda, Paško
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7138962/
https://www.ncbi.nlm.nih.gov/pubmed/32280734
http://dx.doi.org/10.1016/j.dib.2020.105392
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author Štambuk, Nikola
Konjevoda, Paško
author_facet Štambuk, Nikola
Konjevoda, Paško
author_sort Štambuk, Nikola
collection PubMed
description We present the data concerning the clustering of sense and antisense amino acid pairs into polar, nonpolar and neutral groups, as measured using hydrophobicity parameter—logarithmic equilibrium constants (Log(10) K(w>c))—at 25 °C and 100 °C (Wolfenden et al., 2015). The Log(10) K(w>c), values, of the complementary amino acid pairs are strongly correlated to the central (2nd) purine base of the mRNA codon and the complementary pyrimidine base of the tRNA anticodon. Clustering of amino acids is temperature independent with regard to the direction of translation (3′ → 5′ or 5′ → 3′). The Log(10) K(w>c) discriminate between artificial Hecht α- and β-protein datasets at 25 °C and 100 °C. Interpretation of this data may be found in the research article entitled “Determining amino acid scores of the genetic code table: complementarity, structure, function and evolution” (Štambuk and Konjevoda, 2020).
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spelling pubmed-71389622020-04-10 The temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions Štambuk, Nikola Konjevoda, Paško Data Brief Biochemistry, Genetics and Molecular Biology We present the data concerning the clustering of sense and antisense amino acid pairs into polar, nonpolar and neutral groups, as measured using hydrophobicity parameter—logarithmic equilibrium constants (Log(10) K(w>c))—at 25 °C and 100 °C (Wolfenden et al., 2015). The Log(10) K(w>c), values, of the complementary amino acid pairs are strongly correlated to the central (2nd) purine base of the mRNA codon and the complementary pyrimidine base of the tRNA anticodon. Clustering of amino acids is temperature independent with regard to the direction of translation (3′ → 5′ or 5′ → 3′). The Log(10) K(w>c) discriminate between artificial Hecht α- and β-protein datasets at 25 °C and 100 °C. Interpretation of this data may be found in the research article entitled “Determining amino acid scores of the genetic code table: complementarity, structure, function and evolution” (Štambuk and Konjevoda, 2020). Elsevier 2020-03-07 /pmc/articles/PMC7138962/ /pubmed/32280734 http://dx.doi.org/10.1016/j.dib.2020.105392 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Štambuk, Nikola
Konjevoda, Paško
The temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions
title The temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions
title_full The temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions
title_fullStr The temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions
title_full_unstemmed The temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions
title_short The temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions
title_sort temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7138962/
https://www.ncbi.nlm.nih.gov/pubmed/32280734
http://dx.doi.org/10.1016/j.dib.2020.105392
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