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Transcriptomic and Network Analysis Identifies Shared and Unique Pathways across Dementia Spectrum Disorders
Background: Dementia is a growing public health concern with an estimated prevalence of 50 million people worldwide. Alzheimer’s disease (AD) and vascular and frontotemporal dementias (VaD, FTD), share many clinical, genetical, and pathological features making the diagnosis difficult. Methods: In th...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7139711/ https://www.ncbi.nlm.nih.gov/pubmed/32192109 http://dx.doi.org/10.3390/ijms21062050 |
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author | Santiago, Jose A. Bottero, Virginie Potashkin, Judith A. |
author_facet | Santiago, Jose A. Bottero, Virginie Potashkin, Judith A. |
author_sort | Santiago, Jose A. |
collection | PubMed |
description | Background: Dementia is a growing public health concern with an estimated prevalence of 50 million people worldwide. Alzheimer’s disease (AD) and vascular and frontotemporal dementias (VaD, FTD), share many clinical, genetical, and pathological features making the diagnosis difficult. Methods: In this study, we compared the transcriptome from the frontal cortex of patients with AD, VaD, and FTD to identify dysregulated pathways. Results: Upregulated genes in AD were enriched in adherens and tight junctions, mitogen-activated protein kinase, and phosphatidylinositol 3-kinase and protein kinase B/Akt signaling pathways, whereas downregulated genes associated with calcium signaling. Upregulated genes in VaD were centered on infectious diseases and nuclear factor kappa beta signaling, whereas downregulated genes are involved in biosynthesis of amino acids and the pentose phosphate pathway. Upregulated genes in FTD were associated with ECM receptor interactions and the lysosome, whereas downregulated genes were involved in glutamatergic synapse and MAPK signaling. The transcription factor KFL4 was shared among the 3 types of dementia. Conclusions: Collectively, we identified similarities and differences in dysregulated pathways and transcription factors among the dementias. The shared pathways and transcription factors may indicate a potential common etiology, whereas the differences may be useful for distinguishing dementias. |
format | Online Article Text |
id | pubmed-7139711 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-71397112020-04-10 Transcriptomic and Network Analysis Identifies Shared and Unique Pathways across Dementia Spectrum Disorders Santiago, Jose A. Bottero, Virginie Potashkin, Judith A. Int J Mol Sci Article Background: Dementia is a growing public health concern with an estimated prevalence of 50 million people worldwide. Alzheimer’s disease (AD) and vascular and frontotemporal dementias (VaD, FTD), share many clinical, genetical, and pathological features making the diagnosis difficult. Methods: In this study, we compared the transcriptome from the frontal cortex of patients with AD, VaD, and FTD to identify dysregulated pathways. Results: Upregulated genes in AD were enriched in adherens and tight junctions, mitogen-activated protein kinase, and phosphatidylinositol 3-kinase and protein kinase B/Akt signaling pathways, whereas downregulated genes associated with calcium signaling. Upregulated genes in VaD were centered on infectious diseases and nuclear factor kappa beta signaling, whereas downregulated genes are involved in biosynthesis of amino acids and the pentose phosphate pathway. Upregulated genes in FTD were associated with ECM receptor interactions and the lysosome, whereas downregulated genes were involved in glutamatergic synapse and MAPK signaling. The transcription factor KFL4 was shared among the 3 types of dementia. Conclusions: Collectively, we identified similarities and differences in dysregulated pathways and transcription factors among the dementias. The shared pathways and transcription factors may indicate a potential common etiology, whereas the differences may be useful for distinguishing dementias. MDPI 2020-03-17 /pmc/articles/PMC7139711/ /pubmed/32192109 http://dx.doi.org/10.3390/ijms21062050 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Santiago, Jose A. Bottero, Virginie Potashkin, Judith A. Transcriptomic and Network Analysis Identifies Shared and Unique Pathways across Dementia Spectrum Disorders |
title | Transcriptomic and Network Analysis Identifies Shared and Unique Pathways across Dementia Spectrum Disorders |
title_full | Transcriptomic and Network Analysis Identifies Shared and Unique Pathways across Dementia Spectrum Disorders |
title_fullStr | Transcriptomic and Network Analysis Identifies Shared and Unique Pathways across Dementia Spectrum Disorders |
title_full_unstemmed | Transcriptomic and Network Analysis Identifies Shared and Unique Pathways across Dementia Spectrum Disorders |
title_short | Transcriptomic and Network Analysis Identifies Shared and Unique Pathways across Dementia Spectrum Disorders |
title_sort | transcriptomic and network analysis identifies shared and unique pathways across dementia spectrum disorders |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7139711/ https://www.ncbi.nlm.nih.gov/pubmed/32192109 http://dx.doi.org/10.3390/ijms21062050 |
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