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Influence of taxonomic resolution on mutualistic network properties
1. Ecologists are increasingly interested in plant–pollinator networks that synthesize in a single object the species and the interactions linking them within their ecological context. Numerous indices have been developed to describe the structural properties and resilience of these networks, but cu...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7140996/ https://www.ncbi.nlm.nih.gov/pubmed/32273984 http://dx.doi.org/10.1002/ece3.6060 |
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author | Renaud, Estelle Baudry, Emmanuelle Bessa‐Gomes, Carmen |
author_facet | Renaud, Estelle Baudry, Emmanuelle Bessa‐Gomes, Carmen |
author_sort | Renaud, Estelle |
collection | PubMed |
description | 1. Ecologists are increasingly interested in plant–pollinator networks that synthesize in a single object the species and the interactions linking them within their ecological context. Numerous indices have been developed to describe the structural properties and resilience of these networks, but currently, these indices are calculated for a network resolved to the species level, thus preventing the full exploitation of numerous datasets with a lower taxonomic resolution. Here, we used datasets from the literature to study whether taxonomic resolution has an impact on the properties of plant–pollinator networks. 2. For a set of 41 plant–pollinator networks from the literature, we calculated nine network index values at three different taxonomic resolutions: species, genus, and family. We used nine common indices assessing the structural properties or resilience of networks: nestedness (estimated using the nestedness index based on overlap and decreasing fill [NODF], weighted NODF, discrepancy [BR], and spectral radius [SR]), connectance, modularity, robustness to species loss, motifs frequencies, and normalized degree. 3. We observed that modifying the taxonomic resolution of these networks significantly changes the absolute values of the indices that describe their properties, except for the spectral radius and robustness. After the standardization of indices measuring nestedness with the Z‐score, three indices—NODF, BR, and SR for binary matrices—are not significantly different at different taxonomic resolutions. Finally, the relative values of all indices are strongly conserved at different taxonomic resolutions. 4. We conclude that it is possible to meaningfully estimate the properties of plant–pollinator interaction networks with a taxonomic resolution lower than the species level. We would advise using either the SR or robustness on untransformed data, or the NODF, discrepancy, or SR (for weighted networks only) on Z‐scores. Additionally, connectance and modularity can be compared between low taxonomic resolution networks using the rank instead of the absolute values. |
format | Online Article Text |
id | pubmed-7140996 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-71409962020-04-09 Influence of taxonomic resolution on mutualistic network properties Renaud, Estelle Baudry, Emmanuelle Bessa‐Gomes, Carmen Ecol Evol Original Research 1. Ecologists are increasingly interested in plant–pollinator networks that synthesize in a single object the species and the interactions linking them within their ecological context. Numerous indices have been developed to describe the structural properties and resilience of these networks, but currently, these indices are calculated for a network resolved to the species level, thus preventing the full exploitation of numerous datasets with a lower taxonomic resolution. Here, we used datasets from the literature to study whether taxonomic resolution has an impact on the properties of plant–pollinator networks. 2. For a set of 41 plant–pollinator networks from the literature, we calculated nine network index values at three different taxonomic resolutions: species, genus, and family. We used nine common indices assessing the structural properties or resilience of networks: nestedness (estimated using the nestedness index based on overlap and decreasing fill [NODF], weighted NODF, discrepancy [BR], and spectral radius [SR]), connectance, modularity, robustness to species loss, motifs frequencies, and normalized degree. 3. We observed that modifying the taxonomic resolution of these networks significantly changes the absolute values of the indices that describe their properties, except for the spectral radius and robustness. After the standardization of indices measuring nestedness with the Z‐score, three indices—NODF, BR, and SR for binary matrices—are not significantly different at different taxonomic resolutions. Finally, the relative values of all indices are strongly conserved at different taxonomic resolutions. 4. We conclude that it is possible to meaningfully estimate the properties of plant–pollinator interaction networks with a taxonomic resolution lower than the species level. We would advise using either the SR or robustness on untransformed data, or the NODF, discrepancy, or SR (for weighted networks only) on Z‐scores. Additionally, connectance and modularity can be compared between low taxonomic resolution networks using the rank instead of the absolute values. John Wiley and Sons Inc. 2020-03-06 /pmc/articles/PMC7140996/ /pubmed/32273984 http://dx.doi.org/10.1002/ece3.6060 Text en © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Renaud, Estelle Baudry, Emmanuelle Bessa‐Gomes, Carmen Influence of taxonomic resolution on mutualistic network properties |
title | Influence of taxonomic resolution on mutualistic network properties |
title_full | Influence of taxonomic resolution on mutualistic network properties |
title_fullStr | Influence of taxonomic resolution on mutualistic network properties |
title_full_unstemmed | Influence of taxonomic resolution on mutualistic network properties |
title_short | Influence of taxonomic resolution on mutualistic network properties |
title_sort | influence of taxonomic resolution on mutualistic network properties |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7140996/ https://www.ncbi.nlm.nih.gov/pubmed/32273984 http://dx.doi.org/10.1002/ece3.6060 |
work_keys_str_mv | AT renaudestelle influenceoftaxonomicresolutiononmutualisticnetworkproperties AT baudryemmanuelle influenceoftaxonomicresolutiononmutualisticnetworkproperties AT bessagomescarmen influenceoftaxonomicresolutiononmutualisticnetworkproperties |