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BioHackathon 2015: Semantics of data for life sciences and reproducible research
We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication,...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
F1000 Research Limited
2020
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7141167/ https://www.ncbi.nlm.nih.gov/pubmed/32308977 http://dx.doi.org/10.12688/f1000research.18236.1 |
| _version_ | 1783519137608237056 |
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| author | Vos, Rutger A. Katayama, Toshiaki Mishima, Hiroyuki Kawano, Shin Kawashima, Shuichi Kim, Jin-Dong Moriya, Yuki Tokimatsu, Toshiaki Yamaguchi, Atsuko Yamamoto, Yasunori Wu, Hongyan Amstutz, Peter Antezana, Erick Aoki, Nobuyuki P. Arakawa, Kazuharu Bolleman, Jerven T. Bolton, Evan Bonnal, Raoul J. P. Bono, Hidemasa Burger, Kees Chiba, Hirokazu Cohen, Kevin B. Deutsch, Eric W. Fernández-Breis, Jesualdo T. Fu, Gang Fujisawa, Takatomo Fukushima, Atsushi García, Alexander Goto, Naohisa Groza, Tudor Hercus, Colin Hoehndorf, Robert Itaya, Kotone Juty, Nick Kawashima, Takeshi Kim, Jee-Hyub Kinjo, Akira R. Kotera, Masaaki Kozaki, Kouji Kumagai, Sadahiro Kushida, Tatsuya Lütteke, Thomas Matsubara, Masaaki Miyamoto, Joe Mohsen, Attayeb Mori, Hiroshi Naito, Yuki Nakazato, Takeru Nguyen-Xuan, Jeremy Nishida, Kozo Nishida, Naoki Nishide, Hiroyo Ogishima, Soichi Ohta, Tazro Okuda, Shujiro Paten, Benedict Perret, Jean-Luc Prathipati, Philip Prins, Pjotr Queralt-Rosinach, Núria Shinmachi, Daisuke Suzuki, Shinya Tabata, Tsuyosi Takatsuki, Terue Taylor, Kieron Thompson, Mark Uchiyama, Ikuo Vieira, Bruno Wei, Chih-Hsuan Wilkinson, Mark Yamada, Issaku Yamanaka, Ryota Yoshitake, Kazutoshi Yoshizawa, Akiyasu C. Dumontier, Michel Kosaki, Kenjiro Takagi, Toshihisa |
| author_facet | Vos, Rutger A. Katayama, Toshiaki Mishima, Hiroyuki Kawano, Shin Kawashima, Shuichi Kim, Jin-Dong Moriya, Yuki Tokimatsu, Toshiaki Yamaguchi, Atsuko Yamamoto, Yasunori Wu, Hongyan Amstutz, Peter Antezana, Erick Aoki, Nobuyuki P. Arakawa, Kazuharu Bolleman, Jerven T. Bolton, Evan Bonnal, Raoul J. P. Bono, Hidemasa Burger, Kees Chiba, Hirokazu Cohen, Kevin B. Deutsch, Eric W. Fernández-Breis, Jesualdo T. Fu, Gang Fujisawa, Takatomo Fukushima, Atsushi García, Alexander Goto, Naohisa Groza, Tudor Hercus, Colin Hoehndorf, Robert Itaya, Kotone Juty, Nick Kawashima, Takeshi Kim, Jee-Hyub Kinjo, Akira R. Kotera, Masaaki Kozaki, Kouji Kumagai, Sadahiro Kushida, Tatsuya Lütteke, Thomas Matsubara, Masaaki Miyamoto, Joe Mohsen, Attayeb Mori, Hiroshi Naito, Yuki Nakazato, Takeru Nguyen-Xuan, Jeremy Nishida, Kozo Nishida, Naoki Nishide, Hiroyo Ogishima, Soichi Ohta, Tazro Okuda, Shujiro Paten, Benedict Perret, Jean-Luc Prathipati, Philip Prins, Pjotr Queralt-Rosinach, Núria Shinmachi, Daisuke Suzuki, Shinya Tabata, Tsuyosi Takatsuki, Terue Taylor, Kieron Thompson, Mark Uchiyama, Ikuo Vieira, Bruno Wei, Chih-Hsuan Wilkinson, Mark Yamada, Issaku Yamanaka, Ryota Yoshitake, Kazutoshi Yoshizawa, Akiyasu C. Dumontier, Michel Kosaki, Kenjiro Takagi, Toshihisa |
| author_sort | Vos, Rutger A. |
| collection | PubMed |
| description | We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology and phylogeny, proteomics, genomics, glycomics, and metabolomics. We describe our progress to address ongoing challenges to the reusability and reproducibility of research results, and identify outstanding issues that continue to impede the progress of bioinformatics research. We share our perspective on the state of the art, continued challenges, and goals for future research and development for the life sciences Semantic Web. |
| format | Online Article Text |
| id | pubmed-7141167 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2020 |
| publisher | F1000 Research Limited |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-71411672020-04-16 BioHackathon 2015: Semantics of data for life sciences and reproducible research Vos, Rutger A. Katayama, Toshiaki Mishima, Hiroyuki Kawano, Shin Kawashima, Shuichi Kim, Jin-Dong Moriya, Yuki Tokimatsu, Toshiaki Yamaguchi, Atsuko Yamamoto, Yasunori Wu, Hongyan Amstutz, Peter Antezana, Erick Aoki, Nobuyuki P. Arakawa, Kazuharu Bolleman, Jerven T. Bolton, Evan Bonnal, Raoul J. P. Bono, Hidemasa Burger, Kees Chiba, Hirokazu Cohen, Kevin B. Deutsch, Eric W. Fernández-Breis, Jesualdo T. Fu, Gang Fujisawa, Takatomo Fukushima, Atsushi García, Alexander Goto, Naohisa Groza, Tudor Hercus, Colin Hoehndorf, Robert Itaya, Kotone Juty, Nick Kawashima, Takeshi Kim, Jee-Hyub Kinjo, Akira R. Kotera, Masaaki Kozaki, Kouji Kumagai, Sadahiro Kushida, Tatsuya Lütteke, Thomas Matsubara, Masaaki Miyamoto, Joe Mohsen, Attayeb Mori, Hiroshi Naito, Yuki Nakazato, Takeru Nguyen-Xuan, Jeremy Nishida, Kozo Nishida, Naoki Nishide, Hiroyo Ogishima, Soichi Ohta, Tazro Okuda, Shujiro Paten, Benedict Perret, Jean-Luc Prathipati, Philip Prins, Pjotr Queralt-Rosinach, Núria Shinmachi, Daisuke Suzuki, Shinya Tabata, Tsuyosi Takatsuki, Terue Taylor, Kieron Thompson, Mark Uchiyama, Ikuo Vieira, Bruno Wei, Chih-Hsuan Wilkinson, Mark Yamada, Issaku Yamanaka, Ryota Yoshitake, Kazutoshi Yoshizawa, Akiyasu C. Dumontier, Michel Kosaki, Kenjiro Takagi, Toshihisa F1000Res Opinion Article We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology and phylogeny, proteomics, genomics, glycomics, and metabolomics. We describe our progress to address ongoing challenges to the reusability and reproducibility of research results, and identify outstanding issues that continue to impede the progress of bioinformatics research. We share our perspective on the state of the art, continued challenges, and goals for future research and development for the life sciences Semantic Web. F1000 Research Limited 2020-02-24 /pmc/articles/PMC7141167/ /pubmed/32308977 http://dx.doi.org/10.12688/f1000research.18236.1 Text en Copyright: © 2020 Vos RA et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Opinion Article Vos, Rutger A. Katayama, Toshiaki Mishima, Hiroyuki Kawano, Shin Kawashima, Shuichi Kim, Jin-Dong Moriya, Yuki Tokimatsu, Toshiaki Yamaguchi, Atsuko Yamamoto, Yasunori Wu, Hongyan Amstutz, Peter Antezana, Erick Aoki, Nobuyuki P. Arakawa, Kazuharu Bolleman, Jerven T. Bolton, Evan Bonnal, Raoul J. P. Bono, Hidemasa Burger, Kees Chiba, Hirokazu Cohen, Kevin B. Deutsch, Eric W. Fernández-Breis, Jesualdo T. Fu, Gang Fujisawa, Takatomo Fukushima, Atsushi García, Alexander Goto, Naohisa Groza, Tudor Hercus, Colin Hoehndorf, Robert Itaya, Kotone Juty, Nick Kawashima, Takeshi Kim, Jee-Hyub Kinjo, Akira R. Kotera, Masaaki Kozaki, Kouji Kumagai, Sadahiro Kushida, Tatsuya Lütteke, Thomas Matsubara, Masaaki Miyamoto, Joe Mohsen, Attayeb Mori, Hiroshi Naito, Yuki Nakazato, Takeru Nguyen-Xuan, Jeremy Nishida, Kozo Nishida, Naoki Nishide, Hiroyo Ogishima, Soichi Ohta, Tazro Okuda, Shujiro Paten, Benedict Perret, Jean-Luc Prathipati, Philip Prins, Pjotr Queralt-Rosinach, Núria Shinmachi, Daisuke Suzuki, Shinya Tabata, Tsuyosi Takatsuki, Terue Taylor, Kieron Thompson, Mark Uchiyama, Ikuo Vieira, Bruno Wei, Chih-Hsuan Wilkinson, Mark Yamada, Issaku Yamanaka, Ryota Yoshitake, Kazutoshi Yoshizawa, Akiyasu C. Dumontier, Michel Kosaki, Kenjiro Takagi, Toshihisa BioHackathon 2015: Semantics of data for life sciences and reproducible research |
| title | BioHackathon 2015: Semantics of data for life sciences and reproducible research |
| title_full | BioHackathon 2015: Semantics of data for life sciences and reproducible research |
| title_fullStr | BioHackathon 2015: Semantics of data for life sciences and reproducible research |
| title_full_unstemmed | BioHackathon 2015: Semantics of data for life sciences and reproducible research |
| title_short | BioHackathon 2015: Semantics of data for life sciences and reproducible research |
| title_sort | biohackathon 2015: semantics of data for life sciences and reproducible research |
| topic | Opinion Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7141167/ https://www.ncbi.nlm.nih.gov/pubmed/32308977 http://dx.doi.org/10.12688/f1000research.18236.1 |
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