Cargando…

Dynamic spherical harmonics approach for shape classification of migrating cells

Cell migration involves dynamic changes in cell shape. Intricate patterns of cell shape can be analyzed and classified using advanced shape descriptors, including spherical harmonics (SPHARM). Though SPHARM have been used to analyze and classify migrating cells, such classification did not exploit S...

Descripción completa

Detalles Bibliográficos
Autores principales: Medyukhina, Anna, Blickensdorf, Marco, Cseresnyés, Zoltán, Ruef, Nora, Stein, Jens V., Figge, Marc Thilo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7142146/
https://www.ncbi.nlm.nih.gov/pubmed/32269257
http://dx.doi.org/10.1038/s41598-020-62997-7
_version_ 1783519321972015104
author Medyukhina, Anna
Blickensdorf, Marco
Cseresnyés, Zoltán
Ruef, Nora
Stein, Jens V.
Figge, Marc Thilo
author_facet Medyukhina, Anna
Blickensdorf, Marco
Cseresnyés, Zoltán
Ruef, Nora
Stein, Jens V.
Figge, Marc Thilo
author_sort Medyukhina, Anna
collection PubMed
description Cell migration involves dynamic changes in cell shape. Intricate patterns of cell shape can be analyzed and classified using advanced shape descriptors, including spherical harmonics (SPHARM). Though SPHARM have been used to analyze and classify migrating cells, such classification did not exploit SPHARM spectra in their dynamics. Here, we examine whether additional information from dynamic SPHARM improves classification of cell migration patterns. We combine the static and dynamic SPHARM approach with a support-vector-machine classifier and compare their classification accuracies. We demonstrate that the dynamic SPHARM analysis classifies cell migration patterns more accurately than the static one for both synthetic and experimental data. Furthermore, by comparing the computed accuracies with that of a naive classifier, we can identify the experimental conditions and model parameters that significantly affect cell shape. This capability should – in the future – help to pinpoint factors that play an essential role in cell migration.
format Online
Article
Text
id pubmed-7142146
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-71421462020-04-15 Dynamic spherical harmonics approach for shape classification of migrating cells Medyukhina, Anna Blickensdorf, Marco Cseresnyés, Zoltán Ruef, Nora Stein, Jens V. Figge, Marc Thilo Sci Rep Article Cell migration involves dynamic changes in cell shape. Intricate patterns of cell shape can be analyzed and classified using advanced shape descriptors, including spherical harmonics (SPHARM). Though SPHARM have been used to analyze and classify migrating cells, such classification did not exploit SPHARM spectra in their dynamics. Here, we examine whether additional information from dynamic SPHARM improves classification of cell migration patterns. We combine the static and dynamic SPHARM approach with a support-vector-machine classifier and compare their classification accuracies. We demonstrate that the dynamic SPHARM analysis classifies cell migration patterns more accurately than the static one for both synthetic and experimental data. Furthermore, by comparing the computed accuracies with that of a naive classifier, we can identify the experimental conditions and model parameters that significantly affect cell shape. This capability should – in the future – help to pinpoint factors that play an essential role in cell migration. Nature Publishing Group UK 2020-04-08 /pmc/articles/PMC7142146/ /pubmed/32269257 http://dx.doi.org/10.1038/s41598-020-62997-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Medyukhina, Anna
Blickensdorf, Marco
Cseresnyés, Zoltán
Ruef, Nora
Stein, Jens V.
Figge, Marc Thilo
Dynamic spherical harmonics approach for shape classification of migrating cells
title Dynamic spherical harmonics approach for shape classification of migrating cells
title_full Dynamic spherical harmonics approach for shape classification of migrating cells
title_fullStr Dynamic spherical harmonics approach for shape classification of migrating cells
title_full_unstemmed Dynamic spherical harmonics approach for shape classification of migrating cells
title_short Dynamic spherical harmonics approach for shape classification of migrating cells
title_sort dynamic spherical harmonics approach for shape classification of migrating cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7142146/
https://www.ncbi.nlm.nih.gov/pubmed/32269257
http://dx.doi.org/10.1038/s41598-020-62997-7
work_keys_str_mv AT medyukhinaanna dynamicsphericalharmonicsapproachforshapeclassificationofmigratingcells
AT blickensdorfmarco dynamicsphericalharmonicsapproachforshapeclassificationofmigratingcells
AT cseresnyeszoltan dynamicsphericalharmonicsapproachforshapeclassificationofmigratingcells
AT ruefnora dynamicsphericalharmonicsapproachforshapeclassificationofmigratingcells
AT steinjensv dynamicsphericalharmonicsapproachforshapeclassificationofmigratingcells
AT figgemarcthilo dynamicsphericalharmonicsapproachforshapeclassificationofmigratingcells