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Dynamic spherical harmonics approach for shape classification of migrating cells
Cell migration involves dynamic changes in cell shape. Intricate patterns of cell shape can be analyzed and classified using advanced shape descriptors, including spherical harmonics (SPHARM). Though SPHARM have been used to analyze and classify migrating cells, such classification did not exploit S...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7142146/ https://www.ncbi.nlm.nih.gov/pubmed/32269257 http://dx.doi.org/10.1038/s41598-020-62997-7 |
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author | Medyukhina, Anna Blickensdorf, Marco Cseresnyés, Zoltán Ruef, Nora Stein, Jens V. Figge, Marc Thilo |
author_facet | Medyukhina, Anna Blickensdorf, Marco Cseresnyés, Zoltán Ruef, Nora Stein, Jens V. Figge, Marc Thilo |
author_sort | Medyukhina, Anna |
collection | PubMed |
description | Cell migration involves dynamic changes in cell shape. Intricate patterns of cell shape can be analyzed and classified using advanced shape descriptors, including spherical harmonics (SPHARM). Though SPHARM have been used to analyze and classify migrating cells, such classification did not exploit SPHARM spectra in their dynamics. Here, we examine whether additional information from dynamic SPHARM improves classification of cell migration patterns. We combine the static and dynamic SPHARM approach with a support-vector-machine classifier and compare their classification accuracies. We demonstrate that the dynamic SPHARM analysis classifies cell migration patterns more accurately than the static one for both synthetic and experimental data. Furthermore, by comparing the computed accuracies with that of a naive classifier, we can identify the experimental conditions and model parameters that significantly affect cell shape. This capability should – in the future – help to pinpoint factors that play an essential role in cell migration. |
format | Online Article Text |
id | pubmed-7142146 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-71421462020-04-15 Dynamic spherical harmonics approach for shape classification of migrating cells Medyukhina, Anna Blickensdorf, Marco Cseresnyés, Zoltán Ruef, Nora Stein, Jens V. Figge, Marc Thilo Sci Rep Article Cell migration involves dynamic changes in cell shape. Intricate patterns of cell shape can be analyzed and classified using advanced shape descriptors, including spherical harmonics (SPHARM). Though SPHARM have been used to analyze and classify migrating cells, such classification did not exploit SPHARM spectra in their dynamics. Here, we examine whether additional information from dynamic SPHARM improves classification of cell migration patterns. We combine the static and dynamic SPHARM approach with a support-vector-machine classifier and compare their classification accuracies. We demonstrate that the dynamic SPHARM analysis classifies cell migration patterns more accurately than the static one for both synthetic and experimental data. Furthermore, by comparing the computed accuracies with that of a naive classifier, we can identify the experimental conditions and model parameters that significantly affect cell shape. This capability should – in the future – help to pinpoint factors that play an essential role in cell migration. Nature Publishing Group UK 2020-04-08 /pmc/articles/PMC7142146/ /pubmed/32269257 http://dx.doi.org/10.1038/s41598-020-62997-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Medyukhina, Anna Blickensdorf, Marco Cseresnyés, Zoltán Ruef, Nora Stein, Jens V. Figge, Marc Thilo Dynamic spherical harmonics approach for shape classification of migrating cells |
title | Dynamic spherical harmonics approach for shape classification of migrating cells |
title_full | Dynamic spherical harmonics approach for shape classification of migrating cells |
title_fullStr | Dynamic spherical harmonics approach for shape classification of migrating cells |
title_full_unstemmed | Dynamic spherical harmonics approach for shape classification of migrating cells |
title_short | Dynamic spherical harmonics approach for shape classification of migrating cells |
title_sort | dynamic spherical harmonics approach for shape classification of migrating cells |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7142146/ https://www.ncbi.nlm.nih.gov/pubmed/32269257 http://dx.doi.org/10.1038/s41598-020-62997-7 |
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