LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data

We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and Long...

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Detalles Bibliográficos
Autores principales: Fukasawa, Yoshinori, Ermini, Luca, Wang, Hai, Carty, Karen, Cheung, Ming-Sin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Genetics Society of America 2020
Materias:
Software and Data Resources
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7144081/
https://www.ncbi.nlm.nih.gov/pubmed/32041730
http://dx.doi.org/10.1534/g3.119.400864
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author Fukasawa, Yoshinori
Ermini, Luca
Wang, Hai
Carty, Karen
Cheung, Ming-Sin
author_facet Fukasawa, Yoshinori
Ermini, Luca
Wang, Hai
Carty, Karen
Cheung, Ming-Sin
author_sort Fukasawa, Yoshinori
collection PubMed
description We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.
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spelling pubmed-71440812020-04-14 LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data Fukasawa, Yoshinori Ermini, Luca Wang, Hai Carty, Karen Cheung, Ming-Sin G3 (Bethesda) Software and Data Resources We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly. Genetics Society of America 2020-02-10 /pmc/articles/PMC7144081/ /pubmed/32041730 http://dx.doi.org/10.1534/g3.119.400864 Text en Copyright © 2020 Fukasawa et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software and Data Resources
Fukasawa, Yoshinori
Ermini, Luca
Wang, Hai
Carty, Karen
Cheung, Ming-Sin
LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_full LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_fullStr LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_full_unstemmed LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_short LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
title_sort longqc: a quality control tool for third generation sequencing long read data
topic Software and Data Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7144081/
https://www.ncbi.nlm.nih.gov/pubmed/32041730
http://dx.doi.org/10.1534/g3.119.400864
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