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Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host

BACKGROUND: Rosenbergiella nectarea strain 8N4(T), the type species of the genus Rosenbergiella, was isolated from Amygdalus communis (almond) floral nectar. Other strains of this species were isolated from the floral nectar of Citrus paradisi (grapefruit), Nicotiana glauca (tobacco tree) and from A...

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Autores principales: Laviad-Shitrit, Sivan, Izhaki, Ido, Whitman, William B., Shapiro, Nicole, Woyke, Tanja, Kyrpides, Nikos C., Halpern, Malka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7144588/
https://www.ncbi.nlm.nih.gov/pubmed/32292647
http://dx.doi.org/10.7717/peerj.8822
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author Laviad-Shitrit, Sivan
Izhaki, Ido
Whitman, William B.
Shapiro, Nicole
Woyke, Tanja
Kyrpides, Nikos C.
Halpern, Malka
author_facet Laviad-Shitrit, Sivan
Izhaki, Ido
Whitman, William B.
Shapiro, Nicole
Woyke, Tanja
Kyrpides, Nikos C.
Halpern, Malka
author_sort Laviad-Shitrit, Sivan
collection PubMed
description BACKGROUND: Rosenbergiella nectarea strain 8N4(T), the type species of the genus Rosenbergiella, was isolated from Amygdalus communis (almond) floral nectar. Other strains of this species were isolated from the floral nectar of Citrus paradisi (grapefruit), Nicotiana glauca (tobacco tree) and from Asphodelus aestivus. R. nectarea strain 8N4(T) is a Gram-negative, oxidase-negative, facultatively anaerobic bacterium in the family Enterobacteriaceae. RESULTS: Here we describe features of this organism, together with its genome sequence and annotation. The DNA GC content is 47.38%, the assembly size is 3,294,717 bp, and the total number of genes are 3,346. The genome discloses the possible role that this species may play in the plant. The genome contains both virulence genes, like pectin lyase and hemolysin, that may harm plant cells and genes that are predicted to produce volatile compounds that may impact the visitation rates by nectar consumers, such as pollinators and nectar thieves. CONCLUSIONS: The genome of R. nectarea strain 8N4(T) reveals a mutualistic interaction with the plant host and a possible effect on plant pollination and fitness.
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spelling pubmed-71445882020-04-14 Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host Laviad-Shitrit, Sivan Izhaki, Ido Whitman, William B. Shapiro, Nicole Woyke, Tanja Kyrpides, Nikos C. Halpern, Malka PeerJ Ecology BACKGROUND: Rosenbergiella nectarea strain 8N4(T), the type species of the genus Rosenbergiella, was isolated from Amygdalus communis (almond) floral nectar. Other strains of this species were isolated from the floral nectar of Citrus paradisi (grapefruit), Nicotiana glauca (tobacco tree) and from Asphodelus aestivus. R. nectarea strain 8N4(T) is a Gram-negative, oxidase-negative, facultatively anaerobic bacterium in the family Enterobacteriaceae. RESULTS: Here we describe features of this organism, together with its genome sequence and annotation. The DNA GC content is 47.38%, the assembly size is 3,294,717 bp, and the total number of genes are 3,346. The genome discloses the possible role that this species may play in the plant. The genome contains both virulence genes, like pectin lyase and hemolysin, that may harm plant cells and genes that are predicted to produce volatile compounds that may impact the visitation rates by nectar consumers, such as pollinators and nectar thieves. CONCLUSIONS: The genome of R. nectarea strain 8N4(T) reveals a mutualistic interaction with the plant host and a possible effect on plant pollination and fitness. PeerJ Inc. 2020-04-06 /pmc/articles/PMC7144588/ /pubmed/32292647 http://dx.doi.org/10.7717/peerj.8822 Text en © 2020 Laviad-Shitrit et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Ecology
Laviad-Shitrit, Sivan
Izhaki, Ido
Whitman, William B.
Shapiro, Nicole
Woyke, Tanja
Kyrpides, Nikos C.
Halpern, Malka
Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host
title Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host
title_full Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host
title_fullStr Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host
title_full_unstemmed Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host
title_short Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host
title_sort draft genome of rosenbergiella nectarea strain 8n4(t) provides insights into the potential role of this species in its plant host
topic Ecology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7144588/
https://www.ncbi.nlm.nih.gov/pubmed/32292647
http://dx.doi.org/10.7717/peerj.8822
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