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Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host
BACKGROUND: Rosenbergiella nectarea strain 8N4(T), the type species of the genus Rosenbergiella, was isolated from Amygdalus communis (almond) floral nectar. Other strains of this species were isolated from the floral nectar of Citrus paradisi (grapefruit), Nicotiana glauca (tobacco tree) and from A...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7144588/ https://www.ncbi.nlm.nih.gov/pubmed/32292647 http://dx.doi.org/10.7717/peerj.8822 |
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author | Laviad-Shitrit, Sivan Izhaki, Ido Whitman, William B. Shapiro, Nicole Woyke, Tanja Kyrpides, Nikos C. Halpern, Malka |
author_facet | Laviad-Shitrit, Sivan Izhaki, Ido Whitman, William B. Shapiro, Nicole Woyke, Tanja Kyrpides, Nikos C. Halpern, Malka |
author_sort | Laviad-Shitrit, Sivan |
collection | PubMed |
description | BACKGROUND: Rosenbergiella nectarea strain 8N4(T), the type species of the genus Rosenbergiella, was isolated from Amygdalus communis (almond) floral nectar. Other strains of this species were isolated from the floral nectar of Citrus paradisi (grapefruit), Nicotiana glauca (tobacco tree) and from Asphodelus aestivus. R. nectarea strain 8N4(T) is a Gram-negative, oxidase-negative, facultatively anaerobic bacterium in the family Enterobacteriaceae. RESULTS: Here we describe features of this organism, together with its genome sequence and annotation. The DNA GC content is 47.38%, the assembly size is 3,294,717 bp, and the total number of genes are 3,346. The genome discloses the possible role that this species may play in the plant. The genome contains both virulence genes, like pectin lyase and hemolysin, that may harm plant cells and genes that are predicted to produce volatile compounds that may impact the visitation rates by nectar consumers, such as pollinators and nectar thieves. CONCLUSIONS: The genome of R. nectarea strain 8N4(T) reveals a mutualistic interaction with the plant host and a possible effect on plant pollination and fitness. |
format | Online Article Text |
id | pubmed-7144588 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-71445882020-04-14 Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host Laviad-Shitrit, Sivan Izhaki, Ido Whitman, William B. Shapiro, Nicole Woyke, Tanja Kyrpides, Nikos C. Halpern, Malka PeerJ Ecology BACKGROUND: Rosenbergiella nectarea strain 8N4(T), the type species of the genus Rosenbergiella, was isolated from Amygdalus communis (almond) floral nectar. Other strains of this species were isolated from the floral nectar of Citrus paradisi (grapefruit), Nicotiana glauca (tobacco tree) and from Asphodelus aestivus. R. nectarea strain 8N4(T) is a Gram-negative, oxidase-negative, facultatively anaerobic bacterium in the family Enterobacteriaceae. RESULTS: Here we describe features of this organism, together with its genome sequence and annotation. The DNA GC content is 47.38%, the assembly size is 3,294,717 bp, and the total number of genes are 3,346. The genome discloses the possible role that this species may play in the plant. The genome contains both virulence genes, like pectin lyase and hemolysin, that may harm plant cells and genes that are predicted to produce volatile compounds that may impact the visitation rates by nectar consumers, such as pollinators and nectar thieves. CONCLUSIONS: The genome of R. nectarea strain 8N4(T) reveals a mutualistic interaction with the plant host and a possible effect on plant pollination and fitness. PeerJ Inc. 2020-04-06 /pmc/articles/PMC7144588/ /pubmed/32292647 http://dx.doi.org/10.7717/peerj.8822 Text en © 2020 Laviad-Shitrit et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Ecology Laviad-Shitrit, Sivan Izhaki, Ido Whitman, William B. Shapiro, Nicole Woyke, Tanja Kyrpides, Nikos C. Halpern, Malka Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host |
title | Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host |
title_full | Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host |
title_fullStr | Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host |
title_full_unstemmed | Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host |
title_short | Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host |
title_sort | draft genome of rosenbergiella nectarea strain 8n4(t) provides insights into the potential role of this species in its plant host |
topic | Ecology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7144588/ https://www.ncbi.nlm.nih.gov/pubmed/32292647 http://dx.doi.org/10.7717/peerj.8822 |
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