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First Draft Genome of the Sable, Martes zibellina

Members of genus Martes provide early warning signals about forest ecosystem health and are designated as a Management Indicator Species. As one of the most widespread members in Martes, the sable (Martes zibellina) is a circumboreal small predator found throughout all taiga zoogeographical zones of...

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Autores principales: Liu, Guangshuai, Zhao, Chao, Xu, Dongming, Zhang, Huanxin, Monakhov, Vladimir, Shang, Shuai, Gao, Xiaodong, Sha, Weilai, Ma, Jianzhang, Zhang, Wei, Tang, Xuexi, Li, Bo, Hua, Yan, Cao, Xiaofang, Liu, Zhen, Zhang, Honghai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7144822/
https://www.ncbi.nlm.nih.gov/pubmed/32058545
http://dx.doi.org/10.1093/gbe/evaa029
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author Liu, Guangshuai
Zhao, Chao
Xu, Dongming
Zhang, Huanxin
Monakhov, Vladimir
Shang, Shuai
Gao, Xiaodong
Sha, Weilai
Ma, Jianzhang
Zhang, Wei
Tang, Xuexi
Li, Bo
Hua, Yan
Cao, Xiaofang
Liu, Zhen
Zhang, Honghai
author_facet Liu, Guangshuai
Zhao, Chao
Xu, Dongming
Zhang, Huanxin
Monakhov, Vladimir
Shang, Shuai
Gao, Xiaodong
Sha, Weilai
Ma, Jianzhang
Zhang, Wei
Tang, Xuexi
Li, Bo
Hua, Yan
Cao, Xiaofang
Liu, Zhen
Zhang, Honghai
author_sort Liu, Guangshuai
collection PubMed
description Members of genus Martes provide early warning signals about forest ecosystem health and are designated as a Management Indicator Species. As one of the most widespread members in Martes, the sable (Martes zibellina) is a circumboreal small predator found throughout all taiga zoogeographical zones of Eurasia and shows distinct population differentiation and morphological variations. To support further studies on striking local adaptation and population evolution, we present the first sable genome, assembled de novo from an individual originating in the Great Khingan Mountains (China). The assembled genome is 2.42 Gb, consisting of 15,814 scaffolds with a scaffold N50 of 5.20 Mb. Searches for complete Mammalia BUSCO (Benchmarking Universal Single-Copy Ortholog) gene groups found that 95.15% of the curated single-copy orthologs were assembled as complete, suggesting a high level of completeness of the genome. We totally predicted 19,413 protein-coding genes, and 0.82 Gb of repeat sequences was annotated. We also detected 1,257 olfactory receptor genes and found more functional olfactory receptor genes in sable than in other Mustelidae species, which provide a possible genetic explanation for the acute sense of smell of the sable for searching the preys under deep snow. Phylogenetic analyses revealed that the ferret (Mustela putorius furo) and sea otter (Enhydra lutris) form a clade that is sister to the sable, which was dated ∼16.4 Ma. Overall, our study provided the first reference genome for research in a broad range of areas including local adaptations, population evolution, conservation, and management for sable.
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spelling pubmed-71448222020-04-13 First Draft Genome of the Sable, Martes zibellina Liu, Guangshuai Zhao, Chao Xu, Dongming Zhang, Huanxin Monakhov, Vladimir Shang, Shuai Gao, Xiaodong Sha, Weilai Ma, Jianzhang Zhang, Wei Tang, Xuexi Li, Bo Hua, Yan Cao, Xiaofang Liu, Zhen Zhang, Honghai Genome Biol Evol Genome Report Members of genus Martes provide early warning signals about forest ecosystem health and are designated as a Management Indicator Species. As one of the most widespread members in Martes, the sable (Martes zibellina) is a circumboreal small predator found throughout all taiga zoogeographical zones of Eurasia and shows distinct population differentiation and morphological variations. To support further studies on striking local adaptation and population evolution, we present the first sable genome, assembled de novo from an individual originating in the Great Khingan Mountains (China). The assembled genome is 2.42 Gb, consisting of 15,814 scaffolds with a scaffold N50 of 5.20 Mb. Searches for complete Mammalia BUSCO (Benchmarking Universal Single-Copy Ortholog) gene groups found that 95.15% of the curated single-copy orthologs were assembled as complete, suggesting a high level of completeness of the genome. We totally predicted 19,413 protein-coding genes, and 0.82 Gb of repeat sequences was annotated. We also detected 1,257 olfactory receptor genes and found more functional olfactory receptor genes in sable than in other Mustelidae species, which provide a possible genetic explanation for the acute sense of smell of the sable for searching the preys under deep snow. Phylogenetic analyses revealed that the ferret (Mustela putorius furo) and sea otter (Enhydra lutris) form a clade that is sister to the sable, which was dated ∼16.4 Ma. Overall, our study provided the first reference genome for research in a broad range of areas including local adaptations, population evolution, conservation, and management for sable. Oxford University Press 2020-02-14 /pmc/articles/PMC7144822/ /pubmed/32058545 http://dx.doi.org/10.1093/gbe/evaa029 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Liu, Guangshuai
Zhao, Chao
Xu, Dongming
Zhang, Huanxin
Monakhov, Vladimir
Shang, Shuai
Gao, Xiaodong
Sha, Weilai
Ma, Jianzhang
Zhang, Wei
Tang, Xuexi
Li, Bo
Hua, Yan
Cao, Xiaofang
Liu, Zhen
Zhang, Honghai
First Draft Genome of the Sable, Martes zibellina
title First Draft Genome of the Sable, Martes zibellina
title_full First Draft Genome of the Sable, Martes zibellina
title_fullStr First Draft Genome of the Sable, Martes zibellina
title_full_unstemmed First Draft Genome of the Sable, Martes zibellina
title_short First Draft Genome of the Sable, Martes zibellina
title_sort first draft genome of the sable, martes zibellina
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7144822/
https://www.ncbi.nlm.nih.gov/pubmed/32058545
http://dx.doi.org/10.1093/gbe/evaa029
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