Cargando…

A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies

[Image: see text] Classical nonpolarizable models, normally based on a combination of Lennard-Jones sites and point charges, are extensively used to model thermodynamic properties of fluids, including solvation. An important shortcoming of these models is that they do not explicitly account for pola...

Descripción completa

Detalles Bibliográficos
Autores principales: Barrera, Maria Cecilia, Jorge, Miguel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145284/
https://www.ncbi.nlm.nih.gov/pubmed/31977210
http://dx.doi.org/10.1021/acs.jcim.9b01005
_version_ 1783519973311774720
author Barrera, Maria Cecilia
Jorge, Miguel
author_facet Barrera, Maria Cecilia
Jorge, Miguel
author_sort Barrera, Maria Cecilia
collection PubMed
description [Image: see text] Classical nonpolarizable models, normally based on a combination of Lennard-Jones sites and point charges, are extensively used to model thermodynamic properties of fluids, including solvation. An important shortcoming of these models is that they do not explicitly account for polarization effects, i.e., a description of how the electron density responds to changes in the molecular environment. Instead, polarization is implicitly included, in a mean-field sense, into the parameters of the model, usually by fitting to pure liquid properties (e.g., density). This causes problems when trying to describe thermodynamic properties that involve a change of phase (e.g., enthalpy of vaporization), that directly depend on the electronic response of the medium (e.g., dielectric constant), and that require mixing or solvation in different media (e.g., solvation free energies). Fully polarizable models present a natural route for addressing these limitations but at the price of a much higher computational cost. In this work, we combine the best of those two approaches by running fast simulations using nonpolarizable models and applying post facto corrections to the computed properties in order to account for the effects of polarization. By applying this new paradigm, a new united-atom force field for alcohols is developed that is able to predict both pure liquid properties, including dielectric constant, and solvation free energies in different solvents with a high degree of accuracy. This paves the way for the development of a generic classical nonpolarizable force field that can predict solvation of drug-like molecules in a variety of solvents.
format Online
Article
Text
id pubmed-7145284
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-71452842020-04-10 A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies Barrera, Maria Cecilia Jorge, Miguel J Chem Inf Model [Image: see text] Classical nonpolarizable models, normally based on a combination of Lennard-Jones sites and point charges, are extensively used to model thermodynamic properties of fluids, including solvation. An important shortcoming of these models is that they do not explicitly account for polarization effects, i.e., a description of how the electron density responds to changes in the molecular environment. Instead, polarization is implicitly included, in a mean-field sense, into the parameters of the model, usually by fitting to pure liquid properties (e.g., density). This causes problems when trying to describe thermodynamic properties that involve a change of phase (e.g., enthalpy of vaporization), that directly depend on the electronic response of the medium (e.g., dielectric constant), and that require mixing or solvation in different media (e.g., solvation free energies). Fully polarizable models present a natural route for addressing these limitations but at the price of a much higher computational cost. In this work, we combine the best of those two approaches by running fast simulations using nonpolarizable models and applying post facto corrections to the computed properties in order to account for the effects of polarization. By applying this new paradigm, a new united-atom force field for alcohols is developed that is able to predict both pure liquid properties, including dielectric constant, and solvation free energies in different solvents with a high degree of accuracy. This paves the way for the development of a generic classical nonpolarizable force field that can predict solvation of drug-like molecules in a variety of solvents. American Chemical Society 2020-01-24 2020-03-23 /pmc/articles/PMC7145284/ /pubmed/31977210 http://dx.doi.org/10.1021/acs.jcim.9b01005 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Barrera, Maria Cecilia
Jorge, Miguel
A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies
title A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies
title_full A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies
title_fullStr A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies
title_full_unstemmed A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies
title_short A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies
title_sort polarization-consistent model for alcohols to predict solvation free energies
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145284/
https://www.ncbi.nlm.nih.gov/pubmed/31977210
http://dx.doi.org/10.1021/acs.jcim.9b01005
work_keys_str_mv AT barreramariacecilia apolarizationconsistentmodelforalcoholstopredictsolvationfreeenergies
AT jorgemiguel apolarizationconsistentmodelforalcoholstopredictsolvationfreeenergies
AT barreramariacecilia polarizationconsistentmodelforalcoholstopredictsolvationfreeenergies
AT jorgemiguel polarizationconsistentmodelforalcoholstopredictsolvationfreeenergies