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MetaboLights: a resource evolving in response to the needs of its scientific community

MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended...

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Autores principales: Haug, Kenneth, Cochrane, Keeva, Nainala, Venkata Chandrasekhar, Williams, Mark, Chang, Jiakang, Jayaseelan, Kalai Vanii, O’Donovan, Claire
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145518/
https://www.ncbi.nlm.nih.gov/pubmed/31691833
http://dx.doi.org/10.1093/nar/gkz1019
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author Haug, Kenneth
Cochrane, Keeva
Nainala, Venkata Chandrasekhar
Williams, Mark
Chang, Jiakang
Jayaseelan, Kalai Vanii
O’Donovan, Claire
author_facet Haug, Kenneth
Cochrane, Keeva
Nainala, Venkata Chandrasekhar
Williams, Mark
Chang, Jiakang
Jayaseelan, Kalai Vanii
O’Donovan, Claire
author_sort Haug, Kenneth
collection PubMed
description MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information. In this article, we describe the significant updates that we have made over the last two years to the resource to respond to the increasing amount and diversity of data being submitted by the metabolomics community. We refreshed the website and most importantly, our submission process was completely overhauled to enable us to deliver a far more user-friendly submission process and to facilitate the growing demand for reproducibility and integration with other ‘omics. Metabolomics resources and data are available under the EMBL-EBI’s Terms of Use via the web at https://www.ebi.ac.uk/metabolights and under Apache 2.0 at Github (https://github.com/EBI-Metabolights/).
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spelling pubmed-71455182020-04-13 MetaboLights: a resource evolving in response to the needs of its scientific community Haug, Kenneth Cochrane, Keeva Nainala, Venkata Chandrasekhar Williams, Mark Chang, Jiakang Jayaseelan, Kalai Vanii O’Donovan, Claire Nucleic Acids Res Database Issue MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information. In this article, we describe the significant updates that we have made over the last two years to the resource to respond to the increasing amount and diversity of data being submitted by the metabolomics community. We refreshed the website and most importantly, our submission process was completely overhauled to enable us to deliver a far more user-friendly submission process and to facilitate the growing demand for reproducibility and integration with other ‘omics. Metabolomics resources and data are available under the EMBL-EBI’s Terms of Use via the web at https://www.ebi.ac.uk/metabolights and under Apache 2.0 at Github (https://github.com/EBI-Metabolights/). Oxford University Press 2020-01-08 2019-11-06 /pmc/articles/PMC7145518/ /pubmed/31691833 http://dx.doi.org/10.1093/nar/gkz1019 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Haug, Kenneth
Cochrane, Keeva
Nainala, Venkata Chandrasekhar
Williams, Mark
Chang, Jiakang
Jayaseelan, Kalai Vanii
O’Donovan, Claire
MetaboLights: a resource evolving in response to the needs of its scientific community
title MetaboLights: a resource evolving in response to the needs of its scientific community
title_full MetaboLights: a resource evolving in response to the needs of its scientific community
title_fullStr MetaboLights: a resource evolving in response to the needs of its scientific community
title_full_unstemmed MetaboLights: a resource evolving in response to the needs of its scientific community
title_short MetaboLights: a resource evolving in response to the needs of its scientific community
title_sort metabolights: a resource evolving in response to the needs of its scientific community
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145518/
https://www.ncbi.nlm.nih.gov/pubmed/31691833
http://dx.doi.org/10.1093/nar/gkz1019
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