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UCSC Genome Browser enters 20th year
The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data visualization and genome annotations to the research community. In the past year, we have added a new option to our web BLAT tool that allows search a...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145642/ https://www.ncbi.nlm.nih.gov/pubmed/31691824 http://dx.doi.org/10.1093/nar/gkz1012 |
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author | Lee, Christopher M Barber, Galt P Casper, Jonathan Clawson, Hiram Diekhans, Mark Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Brian T Nassar, Luis R Powell, Conner C Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Zweig, Ann S Haussler, David Haeussler, Maximilian Kuhn, Robert M Kent, W James |
author_facet | Lee, Christopher M Barber, Galt P Casper, Jonathan Clawson, Hiram Diekhans, Mark Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Brian T Nassar, Luis R Powell, Conner C Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Zweig, Ann S Haussler, David Haeussler, Maximilian Kuhn, Robert M Kent, W James |
author_sort | Lee, Christopher M |
collection | PubMed |
description | The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data visualization and genome annotations to the research community. In the past year, we have added a new option to our web BLAT tool that allows search against all genomes, a single-cell expression viewer (https://cells.ucsc.edu), a ‘lollipop’ plot display mode for high-density variation data, a RESTful API for data extraction and a custom-track backup feature. New datasets include Tabula Muris single-cell expression data, GeneHancer regulatory annotations, The Cancer Genome Atlas Pan-Cancer variants, Genome Reference Consortium Patch sequences, new ENCODE transcription factor binding site peaks and clusters, the Database of Genomic Variants Gold Standard Variants, Genomenon Mastermind variants and three new multi-species alignment tracks. |
format | Online Article Text |
id | pubmed-7145642 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-71456422020-04-13 UCSC Genome Browser enters 20th year Lee, Christopher M Barber, Galt P Casper, Jonathan Clawson, Hiram Diekhans, Mark Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Brian T Nassar, Luis R Powell, Conner C Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Zweig, Ann S Haussler, David Haeussler, Maximilian Kuhn, Robert M Kent, W James Nucleic Acids Res Database Issue The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data visualization and genome annotations to the research community. In the past year, we have added a new option to our web BLAT tool that allows search against all genomes, a single-cell expression viewer (https://cells.ucsc.edu), a ‘lollipop’ plot display mode for high-density variation data, a RESTful API for data extraction and a custom-track backup feature. New datasets include Tabula Muris single-cell expression data, GeneHancer regulatory annotations, The Cancer Genome Atlas Pan-Cancer variants, Genome Reference Consortium Patch sequences, new ENCODE transcription factor binding site peaks and clusters, the Database of Genomic Variants Gold Standard Variants, Genomenon Mastermind variants and three new multi-species alignment tracks. Oxford University Press 2020-01-08 2019-11-06 /pmc/articles/PMC7145642/ /pubmed/31691824 http://dx.doi.org/10.1093/nar/gkz1012 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Lee, Christopher M Barber, Galt P Casper, Jonathan Clawson, Hiram Diekhans, Mark Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Brian T Nassar, Luis R Powell, Conner C Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Zweig, Ann S Haussler, David Haeussler, Maximilian Kuhn, Robert M Kent, W James UCSC Genome Browser enters 20th year |
title | UCSC Genome Browser enters 20th year |
title_full | UCSC Genome Browser enters 20th year |
title_fullStr | UCSC Genome Browser enters 20th year |
title_full_unstemmed | UCSC Genome Browser enters 20th year |
title_short | UCSC Genome Browser enters 20th year |
title_sort | ucsc genome browser enters 20th year |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145642/ https://www.ncbi.nlm.nih.gov/pubmed/31691824 http://dx.doi.org/10.1093/nar/gkz1012 |
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