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UCSC Genome Browser enters 20th year

The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data visualization and genome annotations to the research community. In the past year, we have added a new option to our web BLAT tool that allows search a...

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Autores principales: Lee, Christopher M, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Brian T, Nassar, Luis R, Powell, Conner C, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Zweig, Ann S, Haussler, David, Haeussler, Maximilian, Kuhn, Robert M, Kent, W James
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145642/
https://www.ncbi.nlm.nih.gov/pubmed/31691824
http://dx.doi.org/10.1093/nar/gkz1012
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author Lee, Christopher M
Barber, Galt P
Casper, Jonathan
Clawson, Hiram
Diekhans, Mark
Gonzalez, Jairo Navarro
Hinrichs, Angie S
Lee, Brian T
Nassar, Luis R
Powell, Conner C
Raney, Brian J
Rosenbloom, Kate R
Schmelter, Daniel
Speir, Matthew L
Zweig, Ann S
Haussler, David
Haeussler, Maximilian
Kuhn, Robert M
Kent, W James
author_facet Lee, Christopher M
Barber, Galt P
Casper, Jonathan
Clawson, Hiram
Diekhans, Mark
Gonzalez, Jairo Navarro
Hinrichs, Angie S
Lee, Brian T
Nassar, Luis R
Powell, Conner C
Raney, Brian J
Rosenbloom, Kate R
Schmelter, Daniel
Speir, Matthew L
Zweig, Ann S
Haussler, David
Haeussler, Maximilian
Kuhn, Robert M
Kent, W James
author_sort Lee, Christopher M
collection PubMed
description The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data visualization and genome annotations to the research community. In the past year, we have added a new option to our web BLAT tool that allows search against all genomes, a single-cell expression viewer (https://cells.ucsc.edu), a ‘lollipop’ plot display mode for high-density variation data, a RESTful API for data extraction and a custom-track backup feature. New datasets include Tabula Muris single-cell expression data, GeneHancer regulatory annotations, The Cancer Genome Atlas Pan-Cancer variants, Genome Reference Consortium Patch sequences, new ENCODE transcription factor binding site peaks and clusters, the Database of Genomic Variants Gold Standard Variants, Genomenon Mastermind variants and three new multi-species alignment tracks.
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spelling pubmed-71456422020-04-13 UCSC Genome Browser enters 20th year Lee, Christopher M Barber, Galt P Casper, Jonathan Clawson, Hiram Diekhans, Mark Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Brian T Nassar, Luis R Powell, Conner C Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Zweig, Ann S Haussler, David Haeussler, Maximilian Kuhn, Robert M Kent, W James Nucleic Acids Res Database Issue The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data visualization and genome annotations to the research community. In the past year, we have added a new option to our web BLAT tool that allows search against all genomes, a single-cell expression viewer (https://cells.ucsc.edu), a ‘lollipop’ plot display mode for high-density variation data, a RESTful API for data extraction and a custom-track backup feature. New datasets include Tabula Muris single-cell expression data, GeneHancer regulatory annotations, The Cancer Genome Atlas Pan-Cancer variants, Genome Reference Consortium Patch sequences, new ENCODE transcription factor binding site peaks and clusters, the Database of Genomic Variants Gold Standard Variants, Genomenon Mastermind variants and three new multi-species alignment tracks. Oxford University Press 2020-01-08 2019-11-06 /pmc/articles/PMC7145642/ /pubmed/31691824 http://dx.doi.org/10.1093/nar/gkz1012 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Lee, Christopher M
Barber, Galt P
Casper, Jonathan
Clawson, Hiram
Diekhans, Mark
Gonzalez, Jairo Navarro
Hinrichs, Angie S
Lee, Brian T
Nassar, Luis R
Powell, Conner C
Raney, Brian J
Rosenbloom, Kate R
Schmelter, Daniel
Speir, Matthew L
Zweig, Ann S
Haussler, David
Haeussler, Maximilian
Kuhn, Robert M
Kent, W James
UCSC Genome Browser enters 20th year
title UCSC Genome Browser enters 20th year
title_full UCSC Genome Browser enters 20th year
title_fullStr UCSC Genome Browser enters 20th year
title_full_unstemmed UCSC Genome Browser enters 20th year
title_short UCSC Genome Browser enters 20th year
title_sort ucsc genome browser enters 20th year
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145642/
https://www.ncbi.nlm.nih.gov/pubmed/31691824
http://dx.doi.org/10.1093/nar/gkz1012
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