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Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers

Microfluidic (MF) advancements have been leveraged toward the development of state-of-the-art platforms for molecular diagnostics, where isothermal amplification schemes allow for further simplification of DNA detection and quantification protocols. The MF integration with loop-mediated isothermal a...

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Autores principales: Oliveira, Beatriz, Veigas, Bruno, Fernandes, Alexandra R., Águas, Hugo, Martins, Rodrigo, Fortunato, Elvira, Baptista, Pedro Viana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7146133/
https://www.ncbi.nlm.nih.gov/pubmed/32183359
http://dx.doi.org/10.3390/s20061624
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author Oliveira, Beatriz
Veigas, Bruno
Fernandes, Alexandra R.
Águas, Hugo
Martins, Rodrigo
Fortunato, Elvira
Baptista, Pedro Viana
author_facet Oliveira, Beatriz
Veigas, Bruno
Fernandes, Alexandra R.
Águas, Hugo
Martins, Rodrigo
Fortunato, Elvira
Baptista, Pedro Viana
author_sort Oliveira, Beatriz
collection PubMed
description Microfluidic (MF) advancements have been leveraged toward the development of state-of-the-art platforms for molecular diagnostics, where isothermal amplification schemes allow for further simplification of DNA detection and quantification protocols. The MF integration with loop-mediated isothermal amplification (LAMP) is today the focus of a new generation of chip-based devices for molecular detection, aiming at fast and automated nucleic acid analysis. Here, we combined MF with droplet digital LAMP (ddLAMP) on an all-in-one device that allows for droplet generation, target amplification, and absolute quantification. This multilayer 3D chip was developed in less than 30 minutes by using a low-cost and extremely adaptable production process that exploits direct laser writing technology in “Shrinky-dinks” polystyrene sheets. ddLAMP and target quantification were performed directly on-chip, showing a high correlation between target concentration and positive droplet score. We validated this integrated chip via the amplification of targets ranging from five to 500,000 copies/reaction. Furthermore, on-chip amplification was performed in a 10 µL volume, attaining a limit of detection of five copies/µL under 60 min. This technology was applied to quantify a cancer biomarker, c-MYC, but it can be further extended to any other disease biomarker.
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spelling pubmed-71461332020-04-15 Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers Oliveira, Beatriz Veigas, Bruno Fernandes, Alexandra R. Águas, Hugo Martins, Rodrigo Fortunato, Elvira Baptista, Pedro Viana Sensors (Basel) Article Microfluidic (MF) advancements have been leveraged toward the development of state-of-the-art platforms for molecular diagnostics, where isothermal amplification schemes allow for further simplification of DNA detection and quantification protocols. The MF integration with loop-mediated isothermal amplification (LAMP) is today the focus of a new generation of chip-based devices for molecular detection, aiming at fast and automated nucleic acid analysis. Here, we combined MF with droplet digital LAMP (ddLAMP) on an all-in-one device that allows for droplet generation, target amplification, and absolute quantification. This multilayer 3D chip was developed in less than 30 minutes by using a low-cost and extremely adaptable production process that exploits direct laser writing technology in “Shrinky-dinks” polystyrene sheets. ddLAMP and target quantification were performed directly on-chip, showing a high correlation between target concentration and positive droplet score. We validated this integrated chip via the amplification of targets ranging from five to 500,000 copies/reaction. Furthermore, on-chip amplification was performed in a 10 µL volume, attaining a limit of detection of five copies/µL under 60 min. This technology was applied to quantify a cancer biomarker, c-MYC, but it can be further extended to any other disease biomarker. MDPI 2020-03-14 /pmc/articles/PMC7146133/ /pubmed/32183359 http://dx.doi.org/10.3390/s20061624 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Oliveira, Beatriz
Veigas, Bruno
Fernandes, Alexandra R.
Águas, Hugo
Martins, Rodrigo
Fortunato, Elvira
Baptista, Pedro Viana
Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers
title Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers
title_full Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers
title_fullStr Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers
title_full_unstemmed Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers
title_short Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers
title_sort fast prototyping microfluidics: integrating droplet digital lamp for absolute quantification of cancer biomarkers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7146133/
https://www.ncbi.nlm.nih.gov/pubmed/32183359
http://dx.doi.org/10.3390/s20061624
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