Cargando…

Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus

Design and development of an effective drug to combat the 2019 novel coronavirus remains a challenge. Therefore, it is of interest to study the binding features of 1615 FDA approved drugs with the recently known 2019-nCoV main protease structure having high sequence homology with that from SARS-CoV....

Descripción completa

Detalles Bibliográficos
Autores principales: Odhar, Hasanain Abdulhameed, Ahjel, Salam Waheed, Albeer, Ali A.Mohammed Ali, Hashim, Ahmed Fadhil, Rayshan, Ali Mahmood, Humadi, Suhad Sami
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7147498/
https://www.ncbi.nlm.nih.gov/pubmed/32308266
http://dx.doi.org/10.6026/97320630016236
_version_ 1783520432688726016
author Odhar, Hasanain Abdulhameed
Ahjel, Salam Waheed
Albeer, Ali A.Mohammed Ali
Hashim, Ahmed Fadhil
Rayshan, Ali Mahmood
Humadi, Suhad Sami
author_facet Odhar, Hasanain Abdulhameed
Ahjel, Salam Waheed
Albeer, Ali A.Mohammed Ali
Hashim, Ahmed Fadhil
Rayshan, Ali Mahmood
Humadi, Suhad Sami
author_sort Odhar, Hasanain Abdulhameed
collection PubMed
description Design and development of an effective drug to combat the 2019 novel coronavirus remains a challenge. Therefore, it is of interest to study the binding features of 1615 FDA approved drugs with the recently known 2019-nCoV main protease structure having high sequence homology with that from SARS-CoV. We document the binding features of top 10 drugs with the target protein. We further report that Conivaptan and Azelastine are mainly involved in hydrophobic interactions with active site residues. Both drugs can maintain close proximity to the binding pocket of main protease during simulation. However, these data need further in vitro and in vivo evaluation to repurpose these two drugs against 2019-nCoV.
format Online
Article
Text
id pubmed-7147498
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Biomedical Informatics
record_format MEDLINE/PubMed
spelling pubmed-71474982020-04-17 Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus Odhar, Hasanain Abdulhameed Ahjel, Salam Waheed Albeer, Ali A.Mohammed Ali Hashim, Ahmed Fadhil Rayshan, Ali Mahmood Humadi, Suhad Sami Bioinformation Research Article Design and development of an effective drug to combat the 2019 novel coronavirus remains a challenge. Therefore, it is of interest to study the binding features of 1615 FDA approved drugs with the recently known 2019-nCoV main protease structure having high sequence homology with that from SARS-CoV. We document the binding features of top 10 drugs with the target protein. We further report that Conivaptan and Azelastine are mainly involved in hydrophobic interactions with active site residues. Both drugs can maintain close proximity to the binding pocket of main protease during simulation. However, these data need further in vitro and in vivo evaluation to repurpose these two drugs against 2019-nCoV. Biomedical Informatics 2020-03-31 /pmc/articles/PMC7147498/ /pubmed/32308266 http://dx.doi.org/10.6026/97320630016236 Text en © 2020 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Research Article
Odhar, Hasanain Abdulhameed
Ahjel, Salam Waheed
Albeer, Ali A.Mohammed Ali
Hashim, Ahmed Fadhil
Rayshan, Ali Mahmood
Humadi, Suhad Sami
Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus
title Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus
title_full Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus
title_fullStr Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus
title_full_unstemmed Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus
title_short Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus
title_sort molecular docking and dynamics simulation of fda approved drugs with the main protease from 2019 novel coronavirus
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7147498/
https://www.ncbi.nlm.nih.gov/pubmed/32308266
http://dx.doi.org/10.6026/97320630016236
work_keys_str_mv AT odharhasanainabdulhameed moleculardockinganddynamicssimulationoffdaapproveddrugswiththemainproteasefrom2019novelcoronavirus
AT ahjelsalamwaheed moleculardockinganddynamicssimulationoffdaapproveddrugswiththemainproteasefrom2019novelcoronavirus
AT albeeraliamohammedali moleculardockinganddynamicssimulationoffdaapproveddrugswiththemainproteasefrom2019novelcoronavirus
AT hashimahmedfadhil moleculardockinganddynamicssimulationoffdaapproveddrugswiththemainproteasefrom2019novelcoronavirus
AT rayshanalimahmood moleculardockinganddynamicssimulationoffdaapproveddrugswiththemainproteasefrom2019novelcoronavirus
AT humadisuhadsami moleculardockinganddynamicssimulationoffdaapproveddrugswiththemainproteasefrom2019novelcoronavirus