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Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus
Design and development of an effective drug to combat the 2019 novel coronavirus remains a challenge. Therefore, it is of interest to study the binding features of 1615 FDA approved drugs with the recently known 2019-nCoV main protease structure having high sequence homology with that from SARS-CoV....
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7147498/ https://www.ncbi.nlm.nih.gov/pubmed/32308266 http://dx.doi.org/10.6026/97320630016236 |
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author | Odhar, Hasanain Abdulhameed Ahjel, Salam Waheed Albeer, Ali A.Mohammed Ali Hashim, Ahmed Fadhil Rayshan, Ali Mahmood Humadi, Suhad Sami |
author_facet | Odhar, Hasanain Abdulhameed Ahjel, Salam Waheed Albeer, Ali A.Mohammed Ali Hashim, Ahmed Fadhil Rayshan, Ali Mahmood Humadi, Suhad Sami |
author_sort | Odhar, Hasanain Abdulhameed |
collection | PubMed |
description | Design and development of an effective drug to combat the 2019 novel coronavirus remains a challenge. Therefore, it is of interest to study the binding features of 1615 FDA approved drugs with the recently known 2019-nCoV main protease structure having high sequence homology with that from SARS-CoV. We document the binding features of top 10 drugs with the target protein. We further report that Conivaptan and Azelastine are mainly involved in hydrophobic interactions with active site residues. Both drugs can maintain close proximity to the binding pocket of main protease during simulation. However, these data need further in vitro and in vivo evaluation to repurpose these two drugs against 2019-nCoV. |
format | Online Article Text |
id | pubmed-7147498 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-71474982020-04-17 Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus Odhar, Hasanain Abdulhameed Ahjel, Salam Waheed Albeer, Ali A.Mohammed Ali Hashim, Ahmed Fadhil Rayshan, Ali Mahmood Humadi, Suhad Sami Bioinformation Research Article Design and development of an effective drug to combat the 2019 novel coronavirus remains a challenge. Therefore, it is of interest to study the binding features of 1615 FDA approved drugs with the recently known 2019-nCoV main protease structure having high sequence homology with that from SARS-CoV. We document the binding features of top 10 drugs with the target protein. We further report that Conivaptan and Azelastine are mainly involved in hydrophobic interactions with active site residues. Both drugs can maintain close proximity to the binding pocket of main protease during simulation. However, these data need further in vitro and in vivo evaluation to repurpose these two drugs against 2019-nCoV. Biomedical Informatics 2020-03-31 /pmc/articles/PMC7147498/ /pubmed/32308266 http://dx.doi.org/10.6026/97320630016236 Text en © 2020 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Research Article Odhar, Hasanain Abdulhameed Ahjel, Salam Waheed Albeer, Ali A.Mohammed Ali Hashim, Ahmed Fadhil Rayshan, Ali Mahmood Humadi, Suhad Sami Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus |
title | Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus |
title_full | Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus |
title_fullStr | Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus |
title_full_unstemmed | Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus |
title_short | Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus |
title_sort | molecular docking and dynamics simulation of fda approved drugs with the main protease from 2019 novel coronavirus |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7147498/ https://www.ncbi.nlm.nih.gov/pubmed/32308266 http://dx.doi.org/10.6026/97320630016236 |
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