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Skin Lesion Segmentation from Dermoscopic Images Using Convolutional Neural Network

Clinical treatment of skin lesion is primarily dependent on timely detection and delimitation of lesion boundaries for accurate cancerous region localization. Prevalence of skin cancer is on the higher side, especially that of melanoma, which is aggressive in nature due to its high metastasis rate....

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Autores principales: Zafar, Kashan, Gilani, Syed Omer, Waris, Asim, Ahmed, Ali, Jamil, Mohsin, Khan, Muhammad Nasir, Sohail Kashif, Amer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7147706/
https://www.ncbi.nlm.nih.gov/pubmed/32183041
http://dx.doi.org/10.3390/s20061601
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author Zafar, Kashan
Gilani, Syed Omer
Waris, Asim
Ahmed, Ali
Jamil, Mohsin
Khan, Muhammad Nasir
Sohail Kashif, Amer
author_facet Zafar, Kashan
Gilani, Syed Omer
Waris, Asim
Ahmed, Ali
Jamil, Mohsin
Khan, Muhammad Nasir
Sohail Kashif, Amer
author_sort Zafar, Kashan
collection PubMed
description Clinical treatment of skin lesion is primarily dependent on timely detection and delimitation of lesion boundaries for accurate cancerous region localization. Prevalence of skin cancer is on the higher side, especially that of melanoma, which is aggressive in nature due to its high metastasis rate. Therefore, timely diagnosis is critical for its treatment before the onset of malignancy. To address this problem, medical imaging is used for the analysis and segmentation of lesion boundaries from dermoscopic images. Various methods have been used, ranging from visual inspection to the textural analysis of the images. However, accuracy of these methods is low for proper clinical treatment because of the sensitivity involved in surgical procedures or drug application. This presents an opportunity to develop an automated model with good accuracy so that it may be used in a clinical setting. This paper proposes an automated method for segmenting lesion boundaries that combines two architectures, the U-Net and the ResNet, collectively called Res-Unet. Moreover, we also used image inpainting for hair removal, which improved the segmentation results significantly. We trained our model on the ISIC 2017 dataset and validated it on the ISIC 2017 test set as well as the PH(2) dataset. Our proposed model attained a Jaccard Index of 0.772 on the ISIC 2017 test set and 0.854 on the PH(2) dataset, which are comparable results to the current available state-of-the-art techniques.
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spelling pubmed-71477062020-04-20 Skin Lesion Segmentation from Dermoscopic Images Using Convolutional Neural Network Zafar, Kashan Gilani, Syed Omer Waris, Asim Ahmed, Ali Jamil, Mohsin Khan, Muhammad Nasir Sohail Kashif, Amer Sensors (Basel) Article Clinical treatment of skin lesion is primarily dependent on timely detection and delimitation of lesion boundaries for accurate cancerous region localization. Prevalence of skin cancer is on the higher side, especially that of melanoma, which is aggressive in nature due to its high metastasis rate. Therefore, timely diagnosis is critical for its treatment before the onset of malignancy. To address this problem, medical imaging is used for the analysis and segmentation of lesion boundaries from dermoscopic images. Various methods have been used, ranging from visual inspection to the textural analysis of the images. However, accuracy of these methods is low for proper clinical treatment because of the sensitivity involved in surgical procedures or drug application. This presents an opportunity to develop an automated model with good accuracy so that it may be used in a clinical setting. This paper proposes an automated method for segmenting lesion boundaries that combines two architectures, the U-Net and the ResNet, collectively called Res-Unet. Moreover, we also used image inpainting for hair removal, which improved the segmentation results significantly. We trained our model on the ISIC 2017 dataset and validated it on the ISIC 2017 test set as well as the PH(2) dataset. Our proposed model attained a Jaccard Index of 0.772 on the ISIC 2017 test set and 0.854 on the PH(2) dataset, which are comparable results to the current available state-of-the-art techniques. MDPI 2020-03-13 /pmc/articles/PMC7147706/ /pubmed/32183041 http://dx.doi.org/10.3390/s20061601 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zafar, Kashan
Gilani, Syed Omer
Waris, Asim
Ahmed, Ali
Jamil, Mohsin
Khan, Muhammad Nasir
Sohail Kashif, Amer
Skin Lesion Segmentation from Dermoscopic Images Using Convolutional Neural Network
title Skin Lesion Segmentation from Dermoscopic Images Using Convolutional Neural Network
title_full Skin Lesion Segmentation from Dermoscopic Images Using Convolutional Neural Network
title_fullStr Skin Lesion Segmentation from Dermoscopic Images Using Convolutional Neural Network
title_full_unstemmed Skin Lesion Segmentation from Dermoscopic Images Using Convolutional Neural Network
title_short Skin Lesion Segmentation from Dermoscopic Images Using Convolutional Neural Network
title_sort skin lesion segmentation from dermoscopic images using convolutional neural network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7147706/
https://www.ncbi.nlm.nih.gov/pubmed/32183041
http://dx.doi.org/10.3390/s20061601
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