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ProteinVR: Web-based molecular visualization in virtual reality

Protein structure determines biological function. Accurately conceptualizing 3D protein/ligand structures is thus vital to scientific research and education. Virtual reality (VR) enables protein visualization in stereoscopic 3D, but many VR molecular-visualization programs are expensive and challeng...

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Autores principales: Cassidy, Kevin C., Šefčík, Jan, Raghav, Yogindra, Chang, Alexander, Durrant, Jacob D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7147804/
https://www.ncbi.nlm.nih.gov/pubmed/32231351
http://dx.doi.org/10.1371/journal.pcbi.1007747
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author Cassidy, Kevin C.
Šefčík, Jan
Raghav, Yogindra
Chang, Alexander
Durrant, Jacob D.
author_facet Cassidy, Kevin C.
Šefčík, Jan
Raghav, Yogindra
Chang, Alexander
Durrant, Jacob D.
author_sort Cassidy, Kevin C.
collection PubMed
description Protein structure determines biological function. Accurately conceptualizing 3D protein/ligand structures is thus vital to scientific research and education. Virtual reality (VR) enables protein visualization in stereoscopic 3D, but many VR molecular-visualization programs are expensive and challenging to use; work only on specific VR headsets; rely on complicated model-preparation software; and/or require the user to install separate programs or plugins. Here we introduce ProteinVR, a web-based application that works on various VR setups and operating systems. ProteinVR displays molecular structures within 3D environments that give useful biological context and allow users to situate themselves in 3D space. Our web-based implementation is ideal for hypothesis generation and education in research and large-classroom settings. We release ProteinVR under the open-source BSD-3-Clause license. A copy of the program is available free of charge from http://durrantlab.com/protein-vr/, and a working version can be accessed at http://durrantlab.com/pvr/.
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spelling pubmed-71478042020-04-24 ProteinVR: Web-based molecular visualization in virtual reality Cassidy, Kevin C. Šefčík, Jan Raghav, Yogindra Chang, Alexander Durrant, Jacob D. PLoS Comput Biol Research Article Protein structure determines biological function. Accurately conceptualizing 3D protein/ligand structures is thus vital to scientific research and education. Virtual reality (VR) enables protein visualization in stereoscopic 3D, but many VR molecular-visualization programs are expensive and challenging to use; work only on specific VR headsets; rely on complicated model-preparation software; and/or require the user to install separate programs or plugins. Here we introduce ProteinVR, a web-based application that works on various VR setups and operating systems. ProteinVR displays molecular structures within 3D environments that give useful biological context and allow users to situate themselves in 3D space. Our web-based implementation is ideal for hypothesis generation and education in research and large-classroom settings. We release ProteinVR under the open-source BSD-3-Clause license. A copy of the program is available free of charge from http://durrantlab.com/protein-vr/, and a working version can be accessed at http://durrantlab.com/pvr/. Public Library of Science 2020-03-31 /pmc/articles/PMC7147804/ /pubmed/32231351 http://dx.doi.org/10.1371/journal.pcbi.1007747 Text en © 2020 Cassidy et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Cassidy, Kevin C.
Šefčík, Jan
Raghav, Yogindra
Chang, Alexander
Durrant, Jacob D.
ProteinVR: Web-based molecular visualization in virtual reality
title ProteinVR: Web-based molecular visualization in virtual reality
title_full ProteinVR: Web-based molecular visualization in virtual reality
title_fullStr ProteinVR: Web-based molecular visualization in virtual reality
title_full_unstemmed ProteinVR: Web-based molecular visualization in virtual reality
title_short ProteinVR: Web-based molecular visualization in virtual reality
title_sort proteinvr: web-based molecular visualization in virtual reality
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7147804/
https://www.ncbi.nlm.nih.gov/pubmed/32231351
http://dx.doi.org/10.1371/journal.pcbi.1007747
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