Cargando…

A unified simulation model for understanding the diversity of cancer evolution

Because cancer evolution underlies the therapeutic difficulties of cancer, it is clinically important to understand the evolutionary dynamics of cancer. Thus far, a number of evolutionary processes have been proposed to be working in cancer evolution. However, there exists no simulation model that c...

Descripción completa

Detalles Bibliográficos
Autores principales: Niida, Atsushi, Hasegawa, Takanori, Innan, Hideki, Shibata, Tatsuhiro, Mimori, Koshi, Miyano, Satoru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7150545/
https://www.ncbi.nlm.nih.gov/pubmed/32296600
http://dx.doi.org/10.7717/peerj.8842
_version_ 1783521053865148416
author Niida, Atsushi
Hasegawa, Takanori
Innan, Hideki
Shibata, Tatsuhiro
Mimori, Koshi
Miyano, Satoru
author_facet Niida, Atsushi
Hasegawa, Takanori
Innan, Hideki
Shibata, Tatsuhiro
Mimori, Koshi
Miyano, Satoru
author_sort Niida, Atsushi
collection PubMed
description Because cancer evolution underlies the therapeutic difficulties of cancer, it is clinically important to understand the evolutionary dynamics of cancer. Thus far, a number of evolutionary processes have been proposed to be working in cancer evolution. However, there exists no simulation model that can describe the different evolutionary processes in a unified manner. In this study, we constructed a unified simulation model for describing the different evolutionary processes and performed sensitivity analysis on the model to determine the conditions in which cancer growth is driven by each of the different evolutionary processes. Our sensitivity analysis has successfully provided a series of novel insights into the evolutionary dynamics of cancer. For example, we found that, while a high neutral mutation rate shapes neutral intratumor heterogeneity (ITH) characterized by a fractal-like pattern, a stem cell hierarchy can also contribute to shaping neutral ITH by apparently increasing the mutation rate. Although It has been reported that the evolutionary principle shaping ITH shifts from selection to accumulation of neutral mutations during colorectal tumorigenesis, our simulation revealed the possibility that this evolutionary shift is triggered by drastic evolutionary events that occur in a short time and confer a marked fitness increase on one or a few cells. This result helps us understand that each process works not separately but simultaneously and continuously as a series of phases of cancer evolution. Collectively, this study serves as a basis to understand in greater depth the diversity of cancer evolution.
format Online
Article
Text
id pubmed-7150545
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-71505452020-04-15 A unified simulation model for understanding the diversity of cancer evolution Niida, Atsushi Hasegawa, Takanori Innan, Hideki Shibata, Tatsuhiro Mimori, Koshi Miyano, Satoru PeerJ Computational Biology Because cancer evolution underlies the therapeutic difficulties of cancer, it is clinically important to understand the evolutionary dynamics of cancer. Thus far, a number of evolutionary processes have been proposed to be working in cancer evolution. However, there exists no simulation model that can describe the different evolutionary processes in a unified manner. In this study, we constructed a unified simulation model for describing the different evolutionary processes and performed sensitivity analysis on the model to determine the conditions in which cancer growth is driven by each of the different evolutionary processes. Our sensitivity analysis has successfully provided a series of novel insights into the evolutionary dynamics of cancer. For example, we found that, while a high neutral mutation rate shapes neutral intratumor heterogeneity (ITH) characterized by a fractal-like pattern, a stem cell hierarchy can also contribute to shaping neutral ITH by apparently increasing the mutation rate. Although It has been reported that the evolutionary principle shaping ITH shifts from selection to accumulation of neutral mutations during colorectal tumorigenesis, our simulation revealed the possibility that this evolutionary shift is triggered by drastic evolutionary events that occur in a short time and confer a marked fitness increase on one or a few cells. This result helps us understand that each process works not separately but simultaneously and continuously as a series of phases of cancer evolution. Collectively, this study serves as a basis to understand in greater depth the diversity of cancer evolution. PeerJ Inc. 2020-04-08 /pmc/articles/PMC7150545/ /pubmed/32296600 http://dx.doi.org/10.7717/peerj.8842 Text en ©2020 Niida et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Computational Biology
Niida, Atsushi
Hasegawa, Takanori
Innan, Hideki
Shibata, Tatsuhiro
Mimori, Koshi
Miyano, Satoru
A unified simulation model for understanding the diversity of cancer evolution
title A unified simulation model for understanding the diversity of cancer evolution
title_full A unified simulation model for understanding the diversity of cancer evolution
title_fullStr A unified simulation model for understanding the diversity of cancer evolution
title_full_unstemmed A unified simulation model for understanding the diversity of cancer evolution
title_short A unified simulation model for understanding the diversity of cancer evolution
title_sort unified simulation model for understanding the diversity of cancer evolution
topic Computational Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7150545/
https://www.ncbi.nlm.nih.gov/pubmed/32296600
http://dx.doi.org/10.7717/peerj.8842
work_keys_str_mv AT niidaatsushi aunifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT hasegawatakanori aunifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT innanhideki aunifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT shibatatatsuhiro aunifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT mimorikoshi aunifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT miyanosatoru aunifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT niidaatsushi unifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT hasegawatakanori unifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT innanhideki unifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT shibatatatsuhiro unifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT mimorikoshi unifiedsimulationmodelforunderstandingthediversityofcancerevolution
AT miyanosatoru unifiedsimulationmodelforunderstandingthediversityofcancerevolution