Cargando…
A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint
Nucleic acids are central to the storage and transmission of genetic information and play essential roles in many cellular processes. Quantitative understanding and modeling of their functions and properties requires quantitative experimental characterization. We use magnetic tweezers (MT) to apply...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7154992/ https://www.ncbi.nlm.nih.gov/pubmed/32309523 http://dx.doi.org/10.1016/j.dib.2020.105404 |
_version_ | 1783521939369754624 |
---|---|
author | Vanderlinden, Willem Kolbeck, Pauline J. Kriegel, Franziska Walker, Philipp U. Lipfert, Jan |
author_facet | Vanderlinden, Willem Kolbeck, Pauline J. Kriegel, Franziska Walker, Philipp U. Lipfert, Jan |
author_sort | Vanderlinden, Willem |
collection | PubMed |
description | Nucleic acids are central to the storage and transmission of genetic information and play essential roles in many cellular processes. Quantitative understanding and modeling of their functions and properties requires quantitative experimental characterization. We use magnetic tweezers (MT) to apply precisely calibrated stretching forces and linking number changes to DNA and RNA molecules tethered between a surface and superparamagnetic beads. Magnetic torque tweezers (MTT) allow to control the linking number of double-stranded DNA or RNA tethers, while directly measuring molecular torque by monitoring changes in the equilibrium rotation angle upon over- or underwinding of the helical molecules. Here, we provide a comprehensive data set of double-stranded DNA and RNA under controlled stretching as a function of the linking number. We present data for extension and torque as a function of linking number in equilibrium. We report data for the critical torque of buckling and of the torsional stiffness of DNA and RNA as a function of applied force. Finally, we provide dynamic data for the hopping behavior at the DNA buckling point. |
format | Online Article Text |
id | pubmed-7154992 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-71549922020-04-17 A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint Vanderlinden, Willem Kolbeck, Pauline J. Kriegel, Franziska Walker, Philipp U. Lipfert, Jan Data Brief Biochemistry, Genetics and Molecular Biology Nucleic acids are central to the storage and transmission of genetic information and play essential roles in many cellular processes. Quantitative understanding and modeling of their functions and properties requires quantitative experimental characterization. We use magnetic tweezers (MT) to apply precisely calibrated stretching forces and linking number changes to DNA and RNA molecules tethered between a surface and superparamagnetic beads. Magnetic torque tweezers (MTT) allow to control the linking number of double-stranded DNA or RNA tethers, while directly measuring molecular torque by monitoring changes in the equilibrium rotation angle upon over- or underwinding of the helical molecules. Here, we provide a comprehensive data set of double-stranded DNA and RNA under controlled stretching as a function of the linking number. We present data for extension and torque as a function of linking number in equilibrium. We report data for the critical torque of buckling and of the torsional stiffness of DNA and RNA as a function of applied force. Finally, we provide dynamic data for the hopping behavior at the DNA buckling point. Elsevier 2020-03-12 /pmc/articles/PMC7154992/ /pubmed/32309523 http://dx.doi.org/10.1016/j.dib.2020.105404 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Biochemistry, Genetics and Molecular Biology Vanderlinden, Willem Kolbeck, Pauline J. Kriegel, Franziska Walker, Philipp U. Lipfert, Jan A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint |
title | A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint |
title_full | A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint |
title_fullStr | A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint |
title_full_unstemmed | A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint |
title_short | A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint |
title_sort | benchmark data set for the mechanical properties of double-stranded dna and rna under torsional constraint |
topic | Biochemistry, Genetics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7154992/ https://www.ncbi.nlm.nih.gov/pubmed/32309523 http://dx.doi.org/10.1016/j.dib.2020.105404 |
work_keys_str_mv | AT vanderlindenwillem abenchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint AT kolbeckpaulinej abenchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint AT kriegelfranziska abenchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint AT walkerphilippu abenchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint AT lipfertjan abenchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint AT vanderlindenwillem benchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint AT kolbeckpaulinej benchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint AT kriegelfranziska benchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint AT walkerphilippu benchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint AT lipfertjan benchmarkdatasetforthemechanicalpropertiesofdoublestrandeddnaandrnaundertorsionalconstraint |